cain and soapdenovo2 now reproducible

Hi all, new batch of newly reproducible packages: cain and soapdenovo2. I have also migrated soapdenovo2 to git and will retire the SVN repo a soon as the package is in unstable. Cheers Sascha

Bug#825529: ITP: ariba -- Antibiotic Resistance Identification By Assembly

Package: wnpp Severity: wishlist Owner: Sascha Steinbiss * Package name: ariba Version : 1.0.0 Upstream Author : Martin Hunt * URL : https://github.com/sanger-pathogens/ariba * License : GPL3 Programming Lang:

Re: Debian packaging of phylophlan and using vsearch instead of usearch

Sorry for answering my own mail. When trying the examples of graphlan I noticed that some files are missing: graphlan/examples/guide $ ./step3.sh Error: No tree file found: guide_2.xml Error: No tree file found: guide_3.xml Error: No tree file found: guide_3.xml graphlan/examples/guide $

Re: Debian packaging of phylophlan and using vsearch instead of usearch

Hi Nicola, On Wed, May 25, 2016 at 07:56:08AM +, Nicola Segata wrote: > Hi Adreas, > we recently updated PhyloPhlAn to support other usearch versions. I'm > CC'ing Francesco (the lead on the project) which can be more accurate on > which usearch version we need for the last version of

Re: odil now reproducible on amd64 and i386

Le 27/05/2016 à 10:22, Andreas Tille a écrit : > Hi Julien, > > On Fri, May 27, 2016 at 09:57:12AM +0200, Julien Lamy wrote: >> I'm pretty confident that my fix will also work on >> armhf, but is there a way to test this without an armhf machine at hand? > > I think the easiest test is to upload

Re: Please provide source code for Tandem Repeats Finder under a freely redistributable license

Dear Yozen, As a research software engineer who works with sequencing analysis researchers I join Andreas in asking you to release Tandem Repeat Finder under a free license. I see that you have been funded with NSF grants, that is great! However, to treat the public ethically, the software

Re: odil now reproducible on amd64 and i386

Hi Julien, On Fri, May 27, 2016 at 09:57:12AM +0200, Julien Lamy wrote: > Dear all, > Since it seems to be reproducibility season, :-) > I've made odil build > reproducibly on amd64 and i386 [1], following the test procedure > described in [2]. Thanks for working on this. > I'm pretty

odil now reproducible on amd64 and i386

Dear all, Since it seems to be reproducibility season, I've made odil build reproducibly on amd64 and i386 [1], following the test procedure described in [2]. I'm pretty confident that my fix will also work on armhf, but is there a way to test this without an armhf machine at hand? [1]

Re: MOM information

Hi Canberk, On Fri, May 27, 2016 at 02:46:04AM +0300, Canberk Koç wrote: > Hello Andreas, > > One of my friend saw i'm working on exonerate and i mentioned him about MOM > event. He'll send an introduction mail. Fine. > He asked me how is MOM works and > what he must to do work in it. Can you