Re: Debian Med in CentOS HPC environment - how?

On Tue, May 31, 2016 at 09:57:06PM -0700, Afif Elghraoui wrote: > > I found Plan 9's namespace concept very interesting and, while it is > based on union mounts, it somewhat achieves the effect that modifying a > set of environment variables would on Unix. As far as *I* understood > (could be wron

Re: RFS: ariba

The link should be obvious for anybody dealing with sponsoring. :-) I'll take it. On Tue, May 31, 2016 at 11:03:19PM +0100, Sascha Steinbiss wrote: > Duh, missed the link [1] > > [1] https://anonscm.debian.org/cgit/debian-med/ariba.git > > S. > > > > On 31 May 2016, at 23:02, Sascha Steinbiss

Re: RFS: ariba

Hi Sascha, On Tue, May 31, 2016 at 11:02:11PM +0100, Sascha Steinbiss wrote: > ARIBA [1] is ready for sponsoring if anyone can spare some time. It is > lintian clean, has automatically generated manpages, build time unit tests > and autopkgtests, and builds reproducibly. when building I see sev

Re: RFS: ariba

Hi Andreas, thanks for having a look at the package. > when building I see several lines like > > WARNING: sspace not found in path. Looked for SSPACE_Basic_v2.0.pl. > But it is optional so will be skipped during assembly Yes, I have talked to ARIBA upstream (we're conveniently sharing the same

Re: Debian packaging of phylophlan and using vsearch instead of usearch

Hi Francesco, On Tue, May 31, 2016 at 06:07:00PM +0200, Francesco Asnicar wrote: > the usearch version for PhyloPhlAn is "usearch5.2.32". The newest versions > of usearch are supported in a new version of PhyloPhlAn that is currently > under development, so we cannot refer to this as stable. Than

SSPACE (Was: RFS: ariba)

Hi Sascha, On Wed, Jun 01, 2016 at 01:45:35PM +0100, Sascha Steinbiss wrote: > > WARNING: sspace not found in path. Looked for SSPACE_Basic_v2.0.pl. > > But it is optional so will be skipped during assembly > > Yes, I have talked to ARIBA upstream (we're conveniently sharing the > same office) an

Re: SSPACE (Was: RFS: ariba)

Hi Andreas, >>> WARNING: sspace not found in path. Looked for >>> SSPACE_Basic_v2.0.pl. But it is optional so will be skipped >>> during assembly >> >> Yes, I have talked to ARIBA upstream (we're conveniently sharing >> the same office) and this is fine to skip; it's not really clear >> whether u

Re: SSPACE (Was: RFS: ariba)

Hi Sascha, On Wed, Jun 01, 2016 at 02:56:41PM +0100, Sascha Steinbiss wrote: > > OK. I've uploaded ariba to new. > > Thanks! Let's hope I will be able to upload updates by myself when it > hits the archive ;) :-) Otherwise I'd add upload permissions for you ... > > I personally can not tell h

[Outreachy] You can use "Team upload" (Was: r22074 - in trunk/packages/conservation-code/trunk/debian: . tests)

Hi Tanya, when looking at the SVN commit log: 1. You can avoid the NMU-revision by adding * Team upload to the changelog file. This can be done automatically by using dch --team 2. Hint for d/control: Adding Testsuite: autopkgtest is fine but redundant s

Test for conservation-code (Was: [Outreachy] You can use "Team upload")

Hi Tanya, On Thu, Jun 02, 2016 at 06:30:12AM +0200, Andreas Tille wrote: > So far for the formal things. I'll check the test itself later. I found faster than expected some time slice. If I start the installation-test script from a random location I get [Errno 2] No such file or directory:

Re: Test for conservation-code (Was: [Outreachy] You can use "Team upload")

On Thu, Jun 02, 2016 at 07:45:46AM +0200, Andreas Tille wrote: > Hi Tanya, > > On Thu, Jun 02, 2016 at 06:30:12AM +0200, Andreas Tille wrote: > > So far for the formal things. I'll check the test itself later. > > I found faster than expected some time slice. > > If I start the installation-tes