Re: [GSoC] Mummer uploaded, next todo list [Was: GDPC Autopkgtes]

On Thu, Jul 28, 2016 at 03:20:43AM +0300, Canberk Koç wrote: > I commit fastqc and kalign to git . Uploaded. However, please add a file debian/README.source where you document from where the example data were fetched from and who has copyright to git. > Probcons not in git can you move it to git

Re: [GSoC] Mummer uploaded, next todo list [Was: GDPC Autopkgtes]

Hello Andreas, I commit fastqc and kalign to git . Probcons not in git can you move it to git please . Thanks for help. Best Regards Canberk Koç [image: https://]about.me/canberkkoc

Re: [Outreachy] pymol

Hi again, I commited two changes to SVN (fix changelog, remove strange file monkeypatch_distutils.pyc no idea how to do this better). When trying to build in pbuilder this (expectedly) failed due to the pinning to a certain libpng12-0 version which does not exist in debian unstable. I stumbled u

Re: [Outreachy] pymol

Hi Tanya, I noticed you have created changelog entries for 1.8.2.1 so you seem to have managed to update the patches and build the new version, right? Could you please merge both entries for 1.8.2.1-1 (UNRELEASED) and 1.8.2.1-2? On Wed, Jul 27, 2016 at 07:44:51PM +0300, merlettaia wrote: > Hi An

Re: [Outreachy] pymol

Hi Andreas, For now I wrote simple test which runs over all .py and .pml scripts inside specific directory and tries to run them with pymol with -c flag (for now this script doesn't care if python errors appear during run - it only checks that pymol closes as expected). This is made because some o

EBI-ELIXIR and descriptional workflows

https://tess.elixir-uk.org/workflows/structural-bioinformatics-workflow I like it. And I very much hope this gets interlinked nicely with bio.tools so the resources of Debian Med are also found that way. It is all a bit high-level/non-existing yet to name the effort a competition to what the CWL i

Re: [GSoC] Mummer uploaded, next todo list [Was: GDPC Autopkgtes]

On Wed, Jul 27, 2016 at 01:22:14PM +0200, Andreas Tille wrote: > Hi Canberk, > > On Wed, Jul 27, 2016 at 02:12:27PM +0300, Canberk Koç wrote: > > Hello Andreas, > > > > I work like finishing 3 packages and do commit will i should commit daily ? > > Please commit right after you finished. I mean

Re: [GSoC] Mummer uploaded, next todo list [Was: GDPC Autopkgtes]

Hi Canberk, On Wed, Jul 27, 2016 at 02:12:27PM +0300, Canberk Koç wrote: > Hello Andreas, > > I work like finishing 3 packages and do commit will i should commit daily ? Please commit right after you finished. > If you want like that i can do it no problem :-) This would be nice Andreas

Re: [GSoC] Mummer uploaded, next todo list [Was: GDPC Autopkgtes]

Hello Andreas, I work like finishing 3 packages and do commit will i should commit daily ? İf you want like that i can do it no problem :-) Best Regards Canberk Koç www.about.me/canberkkoc 27 Tem 2016 09:36 tarihinde "Andreas Tille" yazdı: Hi Canberk, On Wed, Jul 27, 2016 at 01:51:47AM +0300

Description for lefse tools (Was: Origin of data files in MetaPhLan2)

Hi again, I have another question in addition to the one below. I was packaging MetaPhLan2 to make use of it in my final target package for metaBIT[1] which in addition is using some Python code I've found here https://bitbucket.org/nsegata/lefse This code has neither any description I could