Re: CI for filo (Was: Outreachy 2017 (Round 14))

2017-03-29 Thread Charles Plessy
Le Wed, Mar 29, 2017 at 08:37:28AM +0200, Andreas Tille a écrit : > > In principle the best idea would be to convince upstream to choose less > generic names but I think development of filo is stalled. Hi all, indeed the development of filo is stalled. Filo contains three binaires:

Re: CI for mapdamage (Was: Outreachy 2017 (Round 14))

2017-03-29 Thread Nadiya Sitdykova
Hello Andreas, I uncommented all tests in run-unit-test and now they work perfectly fine so I closed the bug #848326 inside changelog Also I added some info to README.test, which I think could be useful for users Regards, Nadiya On Wed, Mar 29, 2017 at 2:48 PM, Nadiya Sitdykova

Re: CI for mapdamage (Was: Outreachy 2017 (Round 14))

2017-03-29 Thread Nadiya Sitdykova
Hello Andreas, >Did you do some investigation what dependency providing liblapack.so and >libblas.so are needed (see my mail from yesterday)? Yes, I tried to run the test with different packages installed, and here are results: packages| result|

Re: SOFA Debian package

2017-03-29 Thread Gert Wollny
Hello Andres, Am Mittwoch, den 29.03.2017, 16:05 +0200 schrieb Andreas Tille: > Is this package still active ?  > > The last changes were done by Gert Wollny in our packaging SVN (Gert, > could you please commit the latest status - it says UNRELEASED > currently). While I did prepare the

Re: SOFA Debian package

2017-03-29 Thread Andreas Tille
Dear Hugo, On Wed, Mar 29, 2017 at 02:54:45PM +0200, Hugo Talbot wrote: > Guillaume Paran (in cc.) and I are in charge of the SOFA consortium . This > consortium focus on the coordination of the developments, the animation of > the open-source community and the release of SOFA. Now regular

CI for filo (Was: Outreachy 2017 (Round 14))

2017-03-29 Thread Andreas Tille
[Changing subject to split the two competing topics] Hi Büşra, On Wed, Mar 29, 2017 at 12:56:40AM +0300, Canberk Koç wrote: ^^^ :-) > I was working on filo and find out something. Filo binaries goes to > /usr/lib/filo section and i think it is

CI for mapdamage (Was: Outreachy 2017 (Round 14))

2017-03-29 Thread Andreas Tille
[Changed subject to split up to topics in one thread] Hi Nadiya, On Tue, Mar 28, 2017 at 10:23:00PM -0700, Nadiya Sitdykova wrote: > 1) I read the paper about mapdamage and figured out that with given pe.sam > file the reference TGCGA wouldn't make sense as the particular type of >