CI for progressivemauve [Outreachy]

2017-07-13 Thread Nadiya Sitdykova
Hello Andreas, Test-suite for progressivemauve package is ready. Regards, Nadiya

Participation to Debian Med

2017-07-13 Thread Cédric Lood
Hello everyone, I am contacting you after having been lurking for some time the Debian Med project and would like to help out. I have some experience with using Linux (my own background being in CS and bioinfo), and I have an interest to learn the tricks of the trade behind the maintenance of

Re: Bug#865552: libbpp-phyl FTBFS with test failures

2017-07-13 Thread Julien Yann Dutheil
Dear Andreas, On Thu, Jul 13, 2017 at 10:53 AM, Andreas Tille wrote: > Hi Julien, > > > > > Also I am not sure what you intend by "explicit notification"... not > > > > sending an email to the full list, right? > > > > > > Well, your changes made it to the commit mailing list[1] and I would > >

Re: Please fix bugs

2017-07-13 Thread Andreas Tille
Hi Fabian, On Thu, Jul 13, 2017 at 09:52:36AM +0200, Fabian Klötzl wrote: > > I have the feeling we are currently receiving way more > > than we are fixing. > > I tried to do my part and applied an available patch to trimmomatic. Not > sure if you want to upload a new version for such a tiny chan

Re: Please fix bugs

2017-07-13 Thread Graham Inggs
On 13 July 2017 at 09:52, Fabian Klötzl wrote: > I tried to do my part and applied an available patch to trimmomatic. Not > sure if you want to upload a new version for such a tiny change, though. > I also had a look at the jellyfish issues with PIE [1]. But it doesn't > even build properly on my

Re: Sponsoring request: andi and libdivsufsort

2017-07-13 Thread Andreas Tille
Done after some changes (please pull). Thanks for your work on this Andreas. On Thu, Jul 13, 2017 at 09:45:40AM +0200, Fabian Klötzl wrote: > Hi all, > > The andi package has been updated to incorporate the latest upstream > version; Sponsoring kindly requested (debian/0.11-1). I also tackled

Re: Bug#865552: libbpp-phyl FTBFS with test failures

2017-07-13 Thread Andreas Tille
Hi Julien, On Thu, Jul 13, 2017 at 09:39:23AM +0200, Julien Yann Dutheil wrote: > > ... > > apt-get source libbpp-seq > > > > your changes in Git are not visible. So this kind of changes are really > > made by quilt patches. As far as I know and others here on this list > > might comment abo

Re: Bug#865552: libbpp-phyl FTBFS with test failures

2017-07-13 Thread Julien Yann Dutheil
Dear Andreas & Debian Med folks On Thu, Jul 13, 2017 at 9:10 AM, Andreas Tille wrote: > Hi Julien, > > > I have to > > admit I find that totally confusing... why adding patches when git has > all > > the history, isn't committing the changes enough? > > Debian packaging is older than Git. The f

Re: Please fix bugs

2017-07-13 Thread Fabian Klötzl
Hi, On 27.06.2017 21:34, Andreas Tille wrote: > I have the feeling we are currently receiving way more > than we are fixing. I tried to do my part and applied an available patch to trimmomatic. Not sure if you want to upload a new version for such a tiny change, though. I also had a look at the j

Sponsoring request: andi and libdivsufsort

2017-07-13 Thread Fabian Klötzl
Hi all, The andi package has been updated to incorporate the latest upstream version; Sponsoring kindly requested (debian/0.11-1). I also tackled some issues with libdivsufsort (debian/2.0.1-3). However, the lintian page shows some errors with ldconfig which I can't reproduce. Maybe they were fixe

Re: Bug#865552: libbpp-phyl FTBFS with test failures

2017-07-13 Thread Andreas Tille
Hi Julien, your last change was in libbpp-seq so it does not really deal with the fact that libbpp-phyl keeps on failing the test suite on mips and mipsel architecture [1]. Could you please have another look into this issue? Thanks a lot for your cooperation Andreas. [1] https://buildd.

Re: Bug#865552: libbpp-phyl FTBFS with test failures

2017-07-13 Thread Andreas Tille
Hi Julien, On Wed, Jul 12, 2017 at 03:35:42PM +0200, Julien Yann Dutheil wrote: > Ok, it is now working. I have fixed the header pb on libbpp-seq and added > and committed a patch following instructions in your last email. Thanks for the patch. I've turned it into a quilt patch and uploaded. >