Hi Nadiya,
On Mon, Aug 07, 2017 at 12:55:21PM -0700, Nadiya Sitdykova wrote:
> 1. I don't know how to make it happen, maybe you can give some hints?
> 2. I think I know the place where jellyfish is called, so it shouldn't be a
> problem to patch kraken to use jellyfish1
Lets simply sit together l
Hello Andreas,
1. I don't know how to make it happen, maybe you can give some hints?
2. I think I know the place where jellyfish is called, so it shouldn't be a
problem to patch kraken to use jellyfish1
Regards, Nadiya
On Thu, Jul 20, 2017 at 9:30 PM, Andreas Tille wrote:
> Hello Nadiya,
>
> O
Hello Andreas,
test-suite for bamtools package is ready.
Regards, Nadiya
On 07/08/2017 17:49, Andreas Tille wrote:
Do you think it would be sensible to file
some RC bug against it to not enter testing?
I cloned #871083 against python-pysam to #871314 and #871315 against
htslib and samtools respectively.
Hello Andreas,
I added some info to README.source and renewed debian/copyright. Although I
wasn't able to find authors of this experiment, only institution that
submitted this data,
so I wrote down the Fred Hutchinson Cancer Research Center as copyright. Is
that ok?
Regards, Nadiya
On Fri, Jul 2
Hi,
On Mon, Aug 07, 2017 at 11:05:22AM -0400, Afif Elghraoui wrote:
>
> Maybe RC bugs are a good idea. They probably should have been uploaded
> to experimental
Sorry for not beeing less carefully when I gave the green light to
Matthias Klumpp for uploading his fix. I agree it should have been
Hi, Graham,
[adding ticket log to Cc]
على الإثنين 7 آب 2017 10:40، كتب Graham Inggs:
> Python-pysam 0.11.2.2+ds-3 migrated to testing on 2017-08-06, completing
> the htslib/samtools/bcftools 1.4.1 transition.
>
> Now htslib 1.5-1 and samtools 1.5-1 have been uploaded and python-pysam
> FTBFS
On 24/07/2017 06:12, Afif Elghraoui wrote:
I was under the impression that htslib 1.5, required for bcftools 1.5,
has a soname bump. There is no pysam release yet to wrap htslib 1.5, so
I think upgrading bcftools/samtools/htslib right now to 1.5 will just
make it impossible to use pysam until a n
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