Ioslides inside rmarkdown has no license

2017-12-11 Thread Andreas Tille
Hi Yihui Xie, I'm considering packaging rmarkdown for Debian since several just packaged software would profit from it. For Debian uploads I need to make sure that each file of the source is available and has a proper license. When I inspected the code I stumbled upon ioslides. This project has

Re: [Debichem-devel] Bug#826069: Adding avogadro to med-bio or replacing ghemical by avogadro in med-bio task

2017-12-11 Thread Michael Banck
Hi, On Thu, Dec 07, 2017 at 07:37:29PM +0100, Andreas Tille wrote: > Consequently this triggers my next question: Would you mind if I > convert avogadro to Git as I have done with garlic and ghemical? Fine with me. Michael

Re: Bug#878498: snakemake FTBFS with Python 3.6 as default

2017-12-11 Thread Andreas Tille
Hi, On Mon, Dec 11, 2017 at 10:53:00PM +0100, chrysn wrote: > > The current master passes build in a cowbuilder that has access to > python3-ratelimiter, and lintian's only serious complaints are the > privacy violations (JavsScript and badges in the documentation and some > web application templ

Re: Bug#878498: snakemake FTBFS with Python 3.6 as default

2017-12-11 Thread chrysn
On Mon, Dec 11, 2017 at 03:45:50PM +0100, Andreas Tille wrote: > > Will let you know when I'm through with those and all is pushed to > > alioth again. The current master passes build in a cowbuilder that has access to python3-ratelimiter, and lintian's only serious complaints are the privacy viol

Re: Bug#884115: RFP: r-cran-rmarkdown -- GNU R tool to convert R Markdown documents into a variety of formats

2017-12-11 Thread Andreas Tille
control: retitle -1 ITP: r-cran-rmarkdown -- GNU R tool to convert R Markdown documents into a variety of formats Hi, I confirm that I retitled (now with correct spelling the bug to ITP and pushed the preliminary packaging to https://anonscm.debian.org/git/debian-med/r-cran-rmarkdown.git I

Re: Uploaded new version 1.6 of htslib, samtools & bcftools to experimental - any known issues with reverse dependencies

2017-12-11 Thread Andreas Tille
Hi Mattia, On Mon, Dec 11, 2017 at 06:29:26PM +0100, Mattia Rizzolo wrote: > On Mon, Dec 11, 2017 at 05:44:53PM +0100, Andreas Tille wrote: > > Sorry for not beeing more verbose. This was the result of the patch > > I've got when trying to build the package *including* the symbols. :-( > > These

Re: Uploaded new version 1.6 of htslib, samtools & bcftools to experimental - any known issues with reverse dependencies

2017-12-11 Thread Mattia Rizzolo
On Mon, Dec 11, 2017 at 05:44:53PM +0100, Andreas Tille wrote: > Sorry for not beeing more verbose. This was the result of the patch > I've got when trying to build the package *including* the symbols. :-( > These were marked as "# MISSING #". > > Feel free to try your luck without removing ...

Re: Uploaded new version 1.6 of htslib, samtools & bcftools to experimental - any known issues with reverse dependencies

2017-12-11 Thread Andreas Tille
On Mon, Dec 11, 2017 at 05:23:21PM +0100, Mattia Rizzolo wrote: > > Although, looking at > https://anonscm.debian.org/cgit/debian-med/htslib.git/commit/?id=ca55c40f2a3154004d6e55eac4bdc2cdffa413b3 > I noticed that: > > 1) you happily removed symbols: why so? removing symbols is a ABI > break, an

Re: Uploaded new version 1.6 of htslib, samtools & bcftools to experimental - any known issues with reverse dependencies

2017-12-11 Thread Mattia Rizzolo
On Mon, Dec 11, 2017 at 04:13:39PM +0100, Andreas Tille wrote: > since we frequently observed issues with incompatibilities of samtools I > uploaded the new version to experimental first. Strictly speaking we > should check whether a transition is needed. Of course a transition (given the definit

Bug#884115: RFP: r-cran-rmarkdown -- GNU R tool to convert R Markdown documents into a variety of formats

2017-12-11 Thread chrysn
Package: wnpp Severity: wishlist * Package name: r-cran-rmarkdown Version : 1.8 Upstream Author : JJ Allaire, Yihui Xie et al * URL : http://rmarkdown.rstudio.com, https://cran.r-project.org/web/packages/rmarkdown/index.html * License : GPL-3

Uploaded new version 1.6 of htslib, samtools & bcftools to experimental - any known issues with reverse dependencies

2017-12-11 Thread Andreas Tille
Hi folks, since we frequently observed issues with incompatibilities of samtools I uploaded the new version to experimental first. Strictly speaking we should check whether a transition is needed. Are there any known issues with incompatibilities of packages listed when you do apt-cache rde

Re: Bug#878498: snakemake FTBFS with Python 3.6 as default

2017-12-11 Thread Andreas Tille
On Mon, Dec 11, 2017 at 03:35:53PM +0100, chrysn wrote: > I've got them all down locally; it'll need some cleaning up (and > possibly upstreaming) of patches, and I have yet to run it in a pbuilder > to see which build dependencies popped up that are undeclared so far, > but I don't expect any show

Re: Bug#878498: snakemake FTBFS with Python 3.6 as default

2017-12-11 Thread chrysn
> The problem is that when trying to build this I get a lot of errors in > the build time tests. Is there any volunteer to have a look? I've got them all down locally; it'll need some cleaning up (and possibly upstreaming) of patches, and I have yet to run it in a pbuilder to see which build depe