Re: htslib: version 1.8 drops symbol cram_nop_decode_reset without bumping soversion

2018-04-27 Thread Andreas Tille
Hi Mattia, you was involved in the discussion of the Github issue[2]. On Fri, Apr 27, 2018 at 05:38:35PM +0200, Andreas Tille wrote: > I've prepared version 1.8 of htslib in Git[1]. I realised that symbol > cram_nop_decode_reset was droped and reported this upstream[2]. I > wonder whether we

Re: Debian Med SVN and Git on Alioth removed (Was: [alioth deprecation] Please remove your unused and/or migrated repositories)

2018-04-27 Thread Alexander Wirt
On Fri, 27 Apr 2018, Andreas Tille wrote: > Hi, > > On Fri, Apr 27, 2018 at 08:55:43AM +0200, Alexander Wirt wrote: > > please remove your old, unused repos on alioth, so that we don't have to > > archive them. > > I've done so since I think there is nothing of any value remaining on > Alioth.

Debian Med SVN and Git on Alioth removed (Was: [alioth deprecation] Please remove your unused and/or migrated repositories)

2018-04-27 Thread Andreas Tille
Hi, On Fri, Apr 27, 2018 at 08:55:43AM +0200, Alexander Wirt wrote: > please remove your old, unused repos on alioth, so that we don't have to > archive them. I've done so since I think there is nothing of any value remaining on Alioth. However there are some remaining repositories in

htslib: version 1.8 drops symbol cram_nop_decode_reset without bumping soversion

2018-04-27 Thread Andreas Tille
Hi, I've prepared version 1.8 of htslib in Git[1]. I realised that symbol cram_nop_decode_reset was droped and reported this upstream[2]. I wonder whether we should simply reintroduce the missing function inside the Debian package to keep the old soversion. Kind regards Andreas. [1]

Re: salsa.d.o merge_requests for pristine-tar and upstream?

2018-04-27 Thread Sascha Steinbiss
Hi Steffen, if I see that correctly this is just a default hook that GitLab does -- offer to open merge requests for each pushed branch. I don't think that fits too well with how we do things: for example, proposing an upstream update via regular merge requests would require all three separate

salsa.d.o merge_requests for pristine-tar and upstream?

2018-04-27 Thread Steffen Möller
Hello, does that piece of magic have any particular practial meaning? The uploads seem to have happened. Many thanks Steffen ~/git/grabix$ git push --all Counting objects: 27, done. Delta compression using up to 2 threads. Compressing objects: 100% (26/26), done. Writing objects: 100% (27/27),

Re: NDEBUG and CMake

2018-04-27 Thread Sébastien Jodogne
Dear Gert, On 26/04/18 09:47, Gert Wollny wrote: Am Mittwoch, den 25.04.2018, 12:32 +0200 schrieb Sébastien Jodogne: cmake -DCMAKE_C_FLAGS=-DNDEBUG -DCMAKE_CXX_FLAGS=-DNDEBUG [...] Please someone could validate this approach? TIA! Add this at the top of d/rules: export

Please allow seqsero to migrate to testing

2018-04-27 Thread Andreas Tille
Hello, We have one more case of an arch:all package held up in testing because a dependency on bwa and other packages which is not available on i386. Can seqsero be allowed to migrate to Testing? https://qa.debian.org/excuses.php?package=seqsero Thanks and regards Andreas. --