Digressions (Re: Bio-Linux 9)

2018-06-23 Thread Charles Plessy
Le Sat, Jun 23, 2018 at 11:45:04AM +0200, Steffen Möller a écrit : > > And if we just remove that red section? After all, we do have ITPs for > what red is meant to express. So, I would rather have red as an indication > of a delta to conda - or to bio-linux to stay in the thread. Hi Steffen, I

Re: (Bug #890784) Autopkgtest for readseq

2018-06-23 Thread Andreas Tille
Dear Liubov, On Sat, Jun 23, 2018 at 03:01:27PM +0200, Liubov Chuprikova wrote: > I have just pushed some changes to readseq, including an autopkgtest and a > patch to fix upstream tests. There is a bug: a conversion to ASN.1 format > works improperly, and it is not trivial to fix. I would have do

Re: Autopkgtest fails if kmer is built with sbuild, but doesn't—with dpkg-buildpackage

2018-06-23 Thread Liubov Chuprikova
Dear Andreas, On Wed, 20 Jun 2018 at 22:10 Andreas Tille wrote: > On Wed, Jun 20, 2018 at 12:13:04AM +0200, Liubov Chuprikova wrote: > > > I am worried that I will not be able to identify the offending piece of > > code. Could you suggest how to proceed here? > > I'd recommend to discuss the iss

(Bug #890784) Autopkgtest for readseq

2018-06-23 Thread Liubov Chuprikova
Hi Andreas, I have just pushed some changes to readseq, including an autopkgtest and a patch to fix upstream tests. There is a bug: a conversion to ASN.1 format works improperly, and it is not trivial to fix. I would have done so if the program was not so old. That is why I have just disabled a "T

Re: Bio-Linux 9

2018-06-23 Thread Steffen Möller
On 6/22/18 9:23 PM, Andreas Tille wrote: > On Fri, Jun 22, 2018 at 05:53:40PM +0200, Steffen Möller wrote: >> @all, anybody who minds if I remove all software from our red list that >> has stale URLs? Hexamer came to mind. Ohters just needs an update of >> their URL like GenoGrapher and yet again