Re: Odil : getting back into testing

2019-01-04 Thread Steffen Möller
For these "leaf" packages in the tree of package dependencies I agree with Michael that we should possibly just "leave" them. Then again, someone deeply caring for that architecture should have a chance to easily find these packages and address the issue. On 04.01.19 20:32, Michael Crusoe

Re: What ffindex do we want to package

2019-01-04 Thread Steffen Möller
Heya, I have replied, at least I had typed it :o/ So, yes, I had chosen that version of ffsort_index to get hhsuite to compile. I have no idea if there are other reverse dependencies on ffindex, my priority is on hhsuite. Cheers, Steffen On 04.01.19 18:17, Michael Crusoe wrote: I think

Re: What ffindex do we want to package

2019-01-04 Thread Andreas Tille
On Fri, Jan 04, 2019 at 07:17:24PM +0200, Michael Crusoe wrote: > I think 0.9.9.7+sog+git20160415.14274c9-1 is the source of the recent FTBFS > of hhsuite: https://bugs.debian.org/917495 as our packaged version is > missing the "ffsort_index" function. > > The hh-suite github repo contains a

Re: Odil : getting back into testing

2019-01-04 Thread Michael Crusoe
I'm increasingly of the opinion that we should not stretch our limited resources even thinner by spending so much time on architectures used for network routers where it is unlikely that anyone will want to view medical image files. În vin., 4 ian. 2019 la 18:40, Julien Lamy a scris: > Hi all,

Bug#918251: d-shlibs: devlibs error: There is no package matching [libsvm3-dev] and noone provides it

2019-01-04 Thread Michael R. Crusoe
Package: d-shlibs Version: 0.83 Severity: normal Dear Maintainer, While fixing the missing linkage to libsvm in libpsortb I received the following message: devlibs error: There is no package matching [libsvm3-dev] and noone provides it, please report bug to d-shlibs maintainer So here I am :-)

Re: Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)

2019-01-04 Thread Joshua Marshall
PVM is no longer maintained, and hasn't been for quite some time. The use case for when PVM is relevant is when RAM on individual machines was closer to 16M. Given that we have $5 computers with 256MB, I find it reasonable to tell such users to upgrade. As for interpro-scan, most of the

Re: What ffindex do we want to package

2019-01-04 Thread Michael Crusoe
I think 0.9.9.7+sog+git20160415.14274c9-1 is the source of the recent FTBFS of hhsuite: https://bugs.debian.org/917495 as our packaged version is missing the "ffsort_index" function. The hh-suite github repo contains a submodule pointing at their fork of ffindex at ~ 2017-06-01:

Odil : getting back into testing

2019-01-04 Thread Julien Lamy
Hi all, The latest version of Odil does not build on mips64el [1] and if I'm not mistaken, this is the only thing preventing the package to migrate to testing. By going through the logs, one of the unit tests times out when building [2]. Since I don't have access to a real mips64el box, I've

Re: Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)

2019-01-04 Thread Steffen Möller
Hello Joshua, I would be much of a fan to see interpro-scan redistributed with Debian. Andreas' concern is that nobody understands what happened. We have Hammer2 in our distribution https://packages.debian.org/sid/hmmer2 and if your work is plain compatible then I don't see why it should not

Re: Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)

2019-01-04 Thread Joshua Marshall
Hello all, In Spring 2018 I was working on packaging interpro-scan for some work. There were a number of packages which has some build or test failures which I worked on. Of these, Hmmer needed some more attention. Originally, this was an upstream request to tweak their autoconf but that went