qiime(2) had unsatisfiable dependencies in d/control

2019-03-11 Thread Liubov Chuprikova
Hi Andreas, The old qiime(1) dependencies were not deleted from the d/control. I have pushed the required changes. Un saludo, Liuba

Outreachy project May-August 2019

2019-03-11 Thread Andreas Tille
Hi, please spread the word: https://www.outreachy.org/may-2019-august-2019-outreachy-internships/communities/debian/#continuous-integration-for-biological-applications Kind regards Andreas. -- http://fam-tille.de

Re: Galaxy under Bio-Linux 9

2019-03-11 Thread Tony Travis
Hi, Casey. Thanks for your helpful reply. In fact, I know Tim well and I worked with him on Bio-Linux for many years. The Debian Med team are looking into the possibility of packaging Galaxy ‘properly’ as opposed to Tim’s hand-crafted binary .deb, for which there was never a source .deb! Thank

Re: linking from debian med packages to bio.tools

2019-03-11 Thread Andreas Tille
On Mon, Mar 11, 2019 at 03:27:45PM +0200, Steffen Möller wrote: > > to https://tracker.debian.org) and not use "fancy" features. > > I have sent a pull request to the blends repository on salsa that has the > chance to present the EDAM topics on our task pages. After fixing a syntax error (missin

Re: Galaxy under Bio-Linux 9

2019-03-11 Thread Casey Bergman
Hi Tony Thanks for getting in touch, but unfortunately I don't have a source package for Galaxy. This work was at NEBC in Oxford by Tim Booth, who appears to have moved on to Edinburgh Genomics: https://github.com/tbooth. I'd say getting in touch with Tim is your best bet to get this informatio

Re: problem with Abyss

2019-03-11 Thread Andreas Tille
Dear Adly, On Mon, Mar 11, 2019 at 02:14:51PM +, Adly Abdalla wrote: > Dear Andreas and TonyThank you very much for your kind help, Now Abyss is > cowing well with multiple threads. I have tested it with np=16 and the run > was successfully. Best regardsAdly Thanks a lot for confirming and

Re: linking from debian med packages to bio.tools

2019-03-11 Thread Steffen Möller
Hello, On 11.03.19 09:07, Andreas Tille wrote: Dear Hervé, hope you had a safe trip home from Debian Med sprint. On Sun, Mar 10, 2019 at 07:40:52PM +0100, Hervé Ménager wrote: Dear all, I have been working with Matus Kalas and Steffen Moeller during the debian-med sprint on linking bio.tools

Re: linking from debian med packages to bio.tools

2019-03-11 Thread Andreas Tille
Dear Hervé, hope you had a safe trip home from Debian Med sprint. On Sun, Mar 10, 2019 at 07:40:52PM +0100, Hervé Ménager wrote: > Dear all, > I have been working with Matus Kalas and Steffen Moeller during the > debian-med sprint on linking bio.tools to debian-med packages. > We created the mapp