ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree?

2020-03-02 Thread Steffen Möller
Hello, igblast is something I want to see added to our distribution. It seems to compile, is also (almost) tests just fine. My concern is that there is so much shipping with it that has nothing to with immunoglobulins: It is alone 138 *.so files and 50 executables, of which only one is called "ig

Re: New InVesalius upstream version (3.1.99994)

2020-03-02 Thread Thiago Franco de Moraes
Hi Andreas On Mon, Mar 2, 2020 at 9:21 AM Andreas Tille wrote: > > Hi Thiago, > > On Sun, Mar 01, 2020 at 07:46:07PM -0300, Thiago Franco de Moraes wrote: > > I've just committed the changes to package new upstream version of > > InVesalius. It seems to be lintian clear. Needs review and sponsor

Re: ncbi-vdb 2.10.3 broken api leading to several rebuild issues

2020-03-02 Thread Andreas Tille
On Fri, Feb 28, 2020 at 09:25:09AM +0100, olivier sallou wrote: > Hi, > I've seen several bug reports raised after debian archive rebuild [0], > seems several are linked to ncbi-vdb. > Packages failed against v2.10 uploaded this month by andreas. > > Seems this release broke ABI getting many undef

Re: New InVesalius upstream version (3.1.99994)

2020-03-02 Thread Andreas Tille
Hi Thiago, On Sun, Mar 01, 2020 at 07:46:07PM -0300, Thiago Franco de Moraes wrote: > I've just committed the changes to package new upstream version of > InVesalius. It seems to be lintian clear. Needs review and sponsorship. I did some routine-update steps on the package in addition to your ch

Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas

2020-03-02 Thread Andreas Tille
Hi Steffen, On Mon, Mar 02, 2020 at 02:34:03AM +0100, Steffen Möller wrote: > Hello, > > I am attempting to package igblast which I hoped to allow an optional > dependency on the NCBI vdb library. This fails at config stage because of > libncbi-vdb2.so* having undefined functions > > $ /usr/local