Thanks to Olek and Scott and for sure all other contributors (Was: Fwd: [covid] New Contributor for biohackathon)

2020-04-08 Thread Andreas Tille
Hi, currently I'm experiencing a situation which I described in several of my talks[1]: For me a team means: Waking up in the morning and realising that somebody else has solved your problem from yesterday. Thanks a lot to all who contributed and let me enjoy my sleep at night Andr

Re: Fwd: [covid] New Contributor for biohackathon

2020-04-08 Thread Olek Wojnar
Hi Scott, On Thu, Apr 9, 2020 at 12:43 AM Scott Kitterman wrote: > > I took care of the request, so they are in the team now and can push the > package to the team repo. Once that's done they can request sponsorship > via > our usual process (either RFS mail to debian-python@l.d.o or put the na

Re: Fwd: [covid] New Contributor for biohackathon

2020-04-08 Thread Scott Kitterman
On Wednesday, April 8, 2020 11:56:22 PM EDT Olek Wojnar wrote: > Dear DPMT members, > > You may be aware that the Debian Med team is in the middle of a > biohackathon [1] to provide better FOSS tools to the medical community for > their work on the COVID-19 pandemic. We just had a new contributor

Re: RFS: recan [ITP]

2020-04-08 Thread merkys
Hi Sao I Kuan, On 2020-04-08 18:08, Sao I Kuan wrote: > I'm looking for a sponsor for the package: > * recan (#956089) > > The packages are on: > https://salsa.debian.org/med-team/recan > > The package was tested on both gbp and sbuild, and lintian-clean. > > Please consider to review and uplo

Fwd: [covid] New Contributor for biohackathon

2020-04-08 Thread Olek Wojnar
Dear DPMT members, You may be aware that the Debian Med team is in the middle of a biohackathon [1] to provide better FOSS tools to the medical community for their work on the COVID-19 pandemic. We just had a new contributor package a Python module that we need for one of our packages. Since time

Re: [covid] New Contributor for biohackathon

2020-04-08 Thread Olek Wojnar
Hi Harley and welcome to the effort! On Wed, Apr 8, 2020 at 10:42 PM fancycade wrote: > Hi there! > > I would like to help out with the efforts of the biohackathon. Sadly I see > I missed the jitsi meetings. I was busy making my first debian package. I > have a pretty good understanding of the d

[covid] New Contributor for biohackathon

2020-04-08 Thread fancycade
Hi there! I would like to help out with the efforts of the biohackathon. Sadly I see I missed the jitsi meetings. I was busy making my first debian package. I have a pretty good understanding of the debian policy, but I'm sure there is room for improvement. I was following the need for packagi

Fwd: Bug#956252: Acknowledgement (RFP: largelavenderlink -- A web conferencing system designed for online learning)

2020-04-08 Thread Olek Wojnar
For those who like BigBlueButton :) -- Forwarded message - From: Debian Bug Tracking System Date: Wed, Apr 8, 2020 at 5:15 PM Subject: Bug#956252: Acknowledgement (RFP: largelavenderlink -- A web conferencing system designed for online learning) To: Olek Wojnar Thank you for fi

Re: Bug#782654: Bug#838416: Bug#782654: Bug#838416: ITP: bazel -- Fast and correct automated build system by Google

2020-04-08 Thread Philipp Kern
On 2020-04-08 19:43, Olek Wojnar wrote: Bazel has suddenly become more important because it is preventing us from getting packages working that would help with the COVID-19 pandemic. Due to the significance, I am copying the Debian Med team as well as key people from this bug's history in the h

Re: Bug#782654: Bug#838416: Bug#782654: Bug#838416: ITP: bazel -- Fast and correct automated build system by Google

2020-04-08 Thread Olek Wojnar
Hi Kyle, (or other interested/involved parties) Bazel has suddenly become more important because it is preventing us from getting packages working that would help with the COVID-19 pandemic. Due to the significance, I am copying the Debian Med team as well as key people from this bug's history in

Re: Additional info: can not see update note: Salmon

2020-04-08 Thread Michael Crusoe
Yes, see https://salsa.debian.org/med-team/salmon/-/blob/master/debian/changelog#L10 for the latest TODO notice about the new puffefish dependency On Wed, Apr 8, 2020 at 6:14 PM Ben Tris wrote: > https://tracker.debian.org/pkg/salmon > > This package seems regularly updated now v1.1.0: > > https

[covid-19] shiny-server (Was: dependencies Re: ITP: streamlit)

2020-04-08 Thread Andreas Tille
Hi Rebecca, On Wed, Apr 08, 2020 at 01:48:52PM +0100, Rebecca N. Palmer wrote: > It does (and eslint itself is one of the packages that we do have but > npm2deb can't find), but even ignoring build dependencies completely and > assuming we can use the plotly.js embedded in python3-plotly or > r-cr

RFS: recan [ITP]

2020-04-08 Thread Sao I Kuan
Hi, I'm looking for a sponsor for the package: * recan (#956089) The packages are on: https://salsa.debian.org/med-team/recan The package was tested on both gbp and sbuild, and lintian-clean. Please consider to review and upload these. Any kind of suggestions are appreciated. Thank you! S

Sponsored upload: odil 0.12.0-1

2020-04-08 Thread Julien Lamy
Dear all, I've updated the Salsa repository of Odil to the latest upstream version (0.12.0). The packages build correctly on sid, and lintian reports neither warnings nor errors. On the packaging side, I've disabled the parallel build in hope that the build failures will stop: the parallel build r

State of shiny-server

2020-04-08 Thread Rebecca N. Palmer
shiny-server has been mentioned as a potential covid-19 related package [0], though it isn't on the current hackathon list [4]. There is a packaging attempt in science-team Salsa (but no formal ITP) from early 2018. Discussion at the time suggests it builds but possibly doesn't work [1], and

Re: dependencies Re: ITP: streamlit

2020-04-08 Thread Rebecca N. Palmer
It does (and eslint itself is one of the packages that we do have but npm2deb can't find), but even ignoring build dependencies completely and assuming we can use the plotly.js embedded in python3-plotly or r-cran-plotly, the recursive dependency tree is >300 different not-yet-packaged modules.

Re: dependencies Re: ITP: streamlit

2020-04-08 Thread merkys
Hi Rebecca, On 2020-04-08 12:08, Rebecca N. Palmer wrote: > The true number of JavaScript dependencies could be lower because > npm2deb depends isn't perfect (it lists missing dependencies for > modules that are already in Debian: these might be optional > dependencies, or modules that are package

dependencies Re: ITP: streamlit

2020-04-08 Thread Rebecca N. Palmer
Existing discussion of this package's dependencies: https://lists.debian.org/debian-med/2020/04/threads.html#00065 Summary: - Python part: 2 tests depend on tensorflow (which is known to be hard to package), but the rest doesn't so skipping these tests is an option. - JavaScript part: npm2deb sa

Bug#956194: ITP: streamlit -- fast way to build custom ML tools

2020-04-08 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: streamlit -- fast way to build custom ML tools Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: streamlit Version : 0.56.0 Upstream Author : Streamlit Inc * URL : https://github.com/streamlit/streamli

Re: [covid-19] Lots of JS dependencies [Was: Missing dependancies for streamlit]

2020-04-08 Thread Andreas Tille
On Wed, Apr 08, 2020 at 11:07:28AM +0300, mer...@debian.org wrote: > On 2020-04-08 07:50, Andreas Tille wrote: > > My experience from other languages made me perfectly expect this. > > Is there an ITP/RFP for streamlit? I would like to add blocking ITP bugs > for it in order to better track the pr

Re: [covid-19] Lots of JS dependencies [Was: Missing dependancies for streamlit]

2020-04-08 Thread merkys
Hi, On 2020-04-08 07:50, Andreas Tille wrote: > My experience from other languages made me perfectly expect this. Is there an ITP/RFP for streamlit? I would like to add blocking ITP bugs for it in order to better track the progress of JS packaging. Best, Andrius

[covid-19] Reviving tensorflow packaging effort (Was: Missing dependancies for streamlit)

2020-04-08 Thread Andreas Tille
Hi Mo, On Wed, Apr 08, 2020 at 02:46:06AM +, Mo Zhou wrote: > On Tue, Apr 07, 2020 at 11:49:07AM +0200, Andreas Tille wrote: > > On Tue, Apr 07, 2020 at 08:56:45AM +0100, Rebecca N. Palmer wrote: > > > tensorflow 1.10 was packaged in experimental, but with reduced > > > performance, > > > and