On 23/07/2020 13:37, Andreas Tille wrote:
[...]
The "pique-input" script should be running /usr/lib/eigensoft/smartpca, not
/usr/bin/smartpca and my version does:
I'll check this. However, in principle I do not consider it the best
idea to use some program that is private to eigensoft and ign
Hi Andreas,
Andreas Tille, on 2020-07-23 22:47:44 +0200:
> Just to be clear about this: I'm fine with any shell as personal user
> environment and every shell has it pros and cons. However, writing
> scripts for a wider audience should simply be written in POSIX shell
> (also without any bash sp
Hi Pierre,
On Thu, Jul 23, 2020 at 10:18:00PM +0200, Pierre Gruet wrote:
> I have packaged the new upstream version of jebl2, available in the
> repository
>
> https://salsa.debian.org/med-team/jebl2
>
> Could you please see and upload? Apart the new upstream version, there
> is just an update o
Hi Andreas,
Andreas Tille, on 2020-07-23 22:51:06 +0200:
> Sounds very good - but I think you forgot to push this new branch.
Whooops, I blindly trusted salsa push, and didn't check the
branch landed on the repository. Sorry about that
I ran a git push --all, this seems to be good now.
Cheers,
Hi Étienne,
On Thu, Jul 23, 2020 at 09:54:07PM +0200, etienne.moll...@mailoo.org wrote:
> > Let's see what I agreed to... :)
>
> I had a look at the mummer package, and actually everything
> seems to be already in place to remove the dependency on csh.
> The Med Team did all the hard work in the
On Thu, Jul 23, 2020 at 07:14:52PM +0200, etienne.moll...@mailoo.org wrote:
> I actually have a bit of a decade old history with Csh, hence my
> having stronger feelings about it than usual perhaps. But no
> worries, I didn't intend to put any blame of any sort on anyone
> neither.
Just to be cle
On Thu, Jul 23, 2020 at 06:16:02PM +, Antoni Villalonga wrote:
> Hi,
>
> https://github.com/PacificBiosciences/FALCON_unzip/issues/160#issuecomment-662481212
>
> > Christopher Dunn (pb-cdunn):
> >
> > We have pushed the latest falcon code-base for python3. If that helps, you
> > are free to
Hello everyone,
I have packaged the new upstream version of jebl2, available in the
repository
https://salsa.debian.org/med-team/jebl2
Could you please see and upload? Apart the new upstream version, there
is just an update of the compat level.
Regards,
Pierre
Good News Andreas,
etienne.moll...@mailoo.org, on 2020-07-23 19:14:53 +0200:
> Andreas Tille, on 2020-07-23 14:43:18 +0200:
> > On Thu, Jul 23, 2020 at 12:48:24PM +0200, etienne.moll...@mailoo.org wrote:
> > > I happily
> > > volunteer to have a look at mummer, or any other package
> > > depending
On Mon, Jun 15, 2020 at 09:07:12AM +0200, Andreas Tille wrote:
> Control: tags -1 upstream
> Control: forwarded -1
> https://github.com/PacificBiosciences/FALCON_unzip/issues/160
>
> Antoni, thanks for opening the issue, Andreas.
Hi,
https://github.com/PacificBiosciences/FALCON_unzip/issues/160
Hi Andreas,
Andreas Tille, on 2020-07-23 14:43:18 +0200:
> On Thu, Jul 23, 2020 at 12:48:24PM +0200, etienne.moll...@mailoo.org wrote:
> > Even though the case for Csh has just been sorted,
>
> I confirm that I did not intended to blame csh maintainers beeing lazy.
> The issues are usually set qu
Hi,
I've fixed gcc-10 FTBFS for mlv-smile as reported here in #957551.
Additionally, I added in autopkgtests as well - builds with passing tests.
I've pushed my changes to the team-repo[1]
Please:
gbp clone --pristine-tar https://salsa.debian.org/med-team/mlv-smile
OR
Grant DM access: PGP key fi
Hi,
I had packaged unifrac a few weeks ago at the team-repo.
It builds fine however I see these lintian errors which I've no idea about:
E: libssu0: custom-library-search-path usr/bin/faithpd
/usr/lib/x86_64-linux-gnu/hdf5/serial
E: libssu0: custom-library-search-path usr/bin/ssu
/usr/lib/x86_64-l
Hi Étienne,
On Thu, Jul 23, 2020 at 12:48:24PM +0200, etienne.moll...@mailoo.org wrote:
>
> Even though the case for Csh has just been sorted,
I confirm that I did not intended to blame csh maintainers beeing lazy.
The issues are usually set quickly. Its just that the inbox of
subscribers of th
Hi Tony,
On Thu, Jul 23, 2020 at 11:41:40AM +0100, Tony Travis wrote:
> On 23/07/2020 07:56, Andreas Tille wrote:
> > > > Create sativas_GWAS.covar file...
> > > > smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
> > > > OOPS -i flag not specified at /usr/bin/smartpca line 21.
> > > > piqu
Hi Andreas,
Andreas Tille, on 2020-07-23 09:02:05 +0200:
> On Thu, Jul 23, 2020 at 12:45:13AM +0200, etienne.moll...@mailoo.org wrote:
> > Before I go to sleep, ...
>
> Hope you slept well. Meanwhile I've uploaded your fine work on dialign-t. ;-)
Fair enough, although UTC+2 is not my favourite
Hi Andreas,
Andreas Tille, on 2020-07-23 09:30:08 +0200:
> csh dependencies are usually unneeded and are creating boring noise in
> all its reverse dependencies. Lots of our packages are depending from
> mummer and all those are now affected from a potential testing removal
> for the only reason
On 23/07/2020 07:56, Andreas Tille wrote:
Hi Tony,
On Wed, Jul 22, 2020 at 11:46:03PM +0100, Tony Travis wrote:
Analysis finished: Mon Jul 20 13:56:47 2020
Create sativas_GWAS.covar file...
smartpca -p sativas_GWAS.par > sativas_GWAS-smartpca.log
OOPS -i flag not specified at /usr/bin/smartpca
Hi folks,
csh dependencies are usually unneeded and are creating boring noise in
all its reverse dependencies. Lots of our packages are depending from
mummer and all those are now affected from a potential testing removal
for the only reason that mummer upstream has a preference for csh over
POSI
Hi Étienne,
On Thu, Jul 23, 2020 at 12:45:13AM +0200, etienne.moll...@mailoo.org wrote:
> Before I go to sleep, ...
Hope you slept well. Meanwhile I've uploaded your fine work on dialign-t. ;-)
Thanks a lot
Andreas.
--
http://fam-tille.de
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