Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?

Hi Rebecca On Mon, 24 Aug 2020 at 01:03, Rebecca N. Palmer wrote: > pandas 1.0 has been in experimental for 6+ months, because it breaks > some of its reverse dependencies: ... > Ubuntu freezes this Thursday, but I suspect I may have left this too > late for that. We can sync 1.0.4+dfsg-1 from e

Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?

Not yet, it should at least be 1.0.5 from Salsa. (Also, q2-* have autopkgtests so it will probably get stuck in -proposed.) On 25/08/2020 08:19, Graham Inggs wrote: Hi Rebecca On Mon, 24 Aug 2020 at 01:03, Rebecca N. Palmer wrote: pandas 1.0 has been in experimental for 6+ months, because it

[RFS] tnseq-transit

gbp clone --pristine-tar https://salsa.debian.org/med-team/tnseq-transit OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and Regards Nilesh

Java packaging in Debian med [Was : Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run] ]

Hi Steffen and Andreas, Le 25/08/2020 à 06:35, Andreas Tille a écrit : > On Tue, Aug 25, 2020 at 12:12:04AM +0200, Steffen Möller wrote: >> I created a "Java" tab on our spreadsheet. Would of course be great if >> that sees some momentum. Took the freedom to also add Cytoscape. And if >> I get thi

Re: VIP

On 25/08/2020 00:17, Steffen Möller wrote: [...] https://tracker.debian.org/pkg/centrifuge was only very recently added to the distribution. I _very_ much support ourselves shifting our discussions from packaging towards using our packages. @Tony, if you have any more or less public dataset in m

Re: [RFS] tnseq-transit

allowed On 25.08.20 16:00, Nilesh Patra wrote: > gbp clone --pristine-tar > https://salsa.debian.org/med-team/tnseq-transit > > > OR > > Grant DM access: PGP key fingerprint: > 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 > > Thanks and Regards > Niles

Re: Java packaging in Debian med [Was : Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run] ]

On 25.08.20 16:37, Pierre Gruet wrote: > Le 25/08/2020 à 06:35, Andreas Tille a écrit : >> On Tue, Aug 25, 2020 at 12:12:04AM +0200, Steffen Möller wrote: >>> I created a "Java" tab on our spreadsheet. Would of course be great if >>> that sees some momentum. Took the freedom to also add Cytoscape

Re: Java packaging in Debian med [Was : Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run] ]

On Tue, Aug 25, 2020 at 04:37:37PM +0200, Pierre Gruet wrote: > >> I get this right, then also nextflow qualifies, which because of > >> "capsule" seems kind of stuck. > > Thanks, I will populate the tab. I already have access to the file. Nice. > > Thanks to Pierre we are close to snpeff. Cyt