another one Re: RFSs

2020-09-11 Thread Steffen Möller
The ones below plus this hidden one for pigx-scrnaseq https://salsa.debian.org/r-pkg-team/r-cran-argparser Many thanks Steffen On 11.09.20 19:06, Steffen Möller wrote: > Hello, > > I marked a couple of packages on the spreadsheet with "RFS" - this > typically means Andreas but if someone else fe

Re: [MoM] ampl-netlib-solvers

2020-09-11 Thread Andrei Rozanski
Hi Andreas, Many thanks for all the help and detailed commits. Also, thanks for guiding me on next steps. I will proceed as you suggested. Best, AndreiR On 9/11/20 10:55 PM, Andreas Tille wrote: Hi Andrei, On Fri, Sep 11, 2020 at 09:48:33PM +0200, Andrei Rozanski wrote: I have pushed a

Re: [MoM] ampl-netlib-solvers

2020-09-11 Thread Andreas Tille
Hi Andrei, On Fri, Sep 11, 2020 at 09:48:33PM +0200, Andrei Rozanski wrote: > I have pushed ampl-netlib-solvers - > https://salsa.debian.org/med-team/ampl-netlib-solvers along with makefile.u > cflags patch. Nice you started this effort. > Would it be possible to check that and guide me on how

[MoM] ampl-netlib-solvers

2020-09-11 Thread Andrei Rozanski
Hi Andreas, I have pushed ampl-netlib-solvers - https://salsa.debian.org/med-team/ampl-netlib-solvers along with makefile.u cflags patch. Would it be possible to check that and guide me on how to proceed? Thanks! Best AndreiR

Re: libbarclay-java needs update, libpicard-java runtime tests by pigx-scrnaseq

2020-09-11 Thread Pierre Gruet
Hi Steffen, Le 11/09/2020 à 02:23, Steffen Möller a écrit : > Hi again, > > On 11.09.20 00:01, Pierre Gruet wrote: >> Hi, >> >> Le 10/09/2020 à 17:11, Andreas Tille a écrit : >>> Hi Steffen, >>> >>> On Thu, Sep 10, 2020 at 03:32:49PM +0200, Steffen Möller wrote: libpicard-java needs an argpa

RFSs

2020-09-11 Thread Steffen Möller
Hello, I marked a couple of packages on the spreadsheet with "RFS" - this typically means Andreas but if someone else feels like eliminating stupidity and uploading - please go for it. All packages are lintian clean and run in pbuilder. Virus tab: https://salsa.debian.org/r-pkg-team/r-bioc-dupr

Re: libbarclay-java needs update, libpicard-java runtime tests by pigx-scrnaseq

2020-09-11 Thread Andreas Tille
On Fri, Sep 11, 2020 at 03:27:55PM +0200, Steffen Möller wrote: > ~/git/med-team/pigx/pigx-scrnaseq$ cat > /home/moeller/git/med-team/pigx/pigx-scrnaseq/tests/out/Log/WT_HEK_0h_br1.0.merge_fastq_to_bam. > log > Error: Unable to initialize main class picard.cmdline.PicardCommandLine > Caused by: jav

Re: libbarclay-java needs update, libpicard-java runtime tests by pigx-scrnaseq

2020-09-11 Thread Steffen Möller
Hello again, On 11.09.20 02:23, Steffen Möller wrote: > libpicard-java just finished building and testing (and it tested > intensively), but pigx-scrnaseq will need to wait for another day. So, libpicard-java and libbarclay-java are both updated ~/git/med-team/pigx/pigx-scrnaseq$ /usr/bin/java -

Problem when trying to upgrade htsjdk

2020-09-11 Thread Andreas Tille
Hi, I tried to upgrade htsjdk[1] but unfortunately I got some build time test errors. It would be great if somebody could have a look. Kind regards Andreas. [1] https://salsa.debian.org/med-team/htsjdk -- http://fam-tille.de