Hi Pierre (and others)
when trying to build the latest version of pilon[1] I get:
...
scalac -classpath /usr/share/java/htsjdk.jar -d pilon.jar
src/main/scala/org/broadinstitute/pilon/*
src/main/scala/org/broadinstitute/pilon/BamFile.scala:24: error: object jdk is
not a member of package scala
Op 8-9-2021 om 09:07 schreef Andrius Merkys:
I am aware of solutions to similar problems, for example, libcifpp
package, which keeps an up-to-date mmcif_pdbx_v50.dic.gz at
/var/cache/libcifpp/mmcif_pdbx_v50.dic.gz. This could work for
components.cif.gz as well, but my main concern is whether ke
Hi Michael,
On 2021-09-08 11:50, Michael Crusoe wrote:
> I would advocate for a local copy (if missing) and an environment
> variable to override so that users can get a newer/different version.
A fallback copy sounds good. Perhaps it would be best to package it in a
separate source/binary packag
I would advocate for a local copy (if missing) and an environment variable
to override so that users can get a newer/different version.
I would also encourage upstream to find a way to embed a hash + download
date in their logs and outputs, if possible.
We should also ask PDB to version their fil
Hi all,
On 2021-07-19 10:24, Nilesh Patra wrote:
> On 19 July 2021 12:50:03 pm IST, Andrius Merkys wrote:
>> Currently I am looking into ProMod3 [3], which seems to be the engine
>> behind the great SWISS-MODEL service [4]. I seem to have figured out
>> the
>> dependencies, will go on to packagin
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