[Advent bug squashing] Bug#919052: marked as done (python-pbcore: some docs for pbcore are not found)

2021-12-23 Thread Andreas Tille
Closed in as always great cooperation with Nilesh Patra. [ Andreas Tille ] * Attempt to enhance creation of documentation to address bug #919052 * abandon pyxb, use xmlschema for validation if installed . [ Nilesh Patra ] * Fix creation of docs Closes: #919052 -- http://fam

Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaT

2021-12-23 Thread Andreas Tille
Hi Pierre, Am Thu, Dec 23, 2021 at 05:42:24PM +0100 schrieb Pierre Gruet: > You're welcome! Thanks for your help on this. That's team work, isn't it? ;-) > While we are at it: this new version solved the issue but another test > failed, seemingly for the same reason. So I uploaded version 3.3.1

Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaT

2021-12-23 Thread Pierre Gruet
Hi Andreas, On 23/12/2021 17:27, Andreas Tille wrote: Thanks Pierre for your work. :-) Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Closes: 1002155 Changes: libgoby-java (3.3.1+dfsg2-6) unstable; urgency=medium . * Adding --no-parallel flag to dh_auto_test to avoid

[Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCom

2021-12-23 Thread Andreas Tille
Thanks Pierre for your work. :-) Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Closes: 1002155 Changes: libgoby-java (3.3.1+dfsg2-6) unstable; urgency=medium . * Adding --no-parallel flag to dh_auto_test to avoid concurrent access to some files during the tests (Close

Re: python-pbcore: some docs for pbcore are not found

2021-12-23 Thread Nilesh Patra
On 12/23/21 5:43 PM, Andreas Tille wrote: Hi, despite I changed the call to create the docs from $(MAKE) doc to PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) $(MAKE) doc I just pushed a fix to salsa, please check. Regards, Nilesh OpenPGP_signature

[Advent bug squashing] Re: FTBFS: error: package org.testng does not exist

2021-12-23 Thread Andreas Tille
From: Andreas Tille To: 877590-d...@bugs.debian.org Subject: Done: FTBFS: error: package org.testng does not exist Date: Thu, 23 Dec 2021 09:32:59 +0100 Cleaning up BTS from bugs that are fixed since a long time -- http://fam-tille.de

Re: python-pbcore: some docs for pbcore are not found

2021-12-23 Thread Andreas Tille
Hi, despite I changed the call to create the docs from $(MAKE) doc to PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) $(MAKE) doc (OK, I appended '|| true' to get the package built) the doc creation is not properly done as you can see in Salsa CI[1]: ... W

Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip

2021-12-23 Thread Nilesh Patra
On 12/23/21 3:57 PM, Andreas Tille wrote: Am Thu, Dec 23, 2021 at 12:13:57PM +0200 schrieb Andrius Merkys: Is Python package providing 'xmlschema' installed? To me this seems like setup.py attempts to install missing dependencies. diff --git a/debian/control b/debian/control - pyt

Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip

2021-12-23 Thread Andrius Merkys
On 2021-12-23 12:27, Andreas Tille wrote: > This change > > diff --git a/debian/control b/debian/control > index faadcf3..5f9cfbd 100644 > --- a/debian/control > +++ b/debian/control > @@ -18,7 +18,7 @@ Build-Depends: debhelper-compat (= 12), > python3-pytest-xdist , >

Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip

2021-12-23 Thread Andreas Tille
Am Thu, Dec 23, 2021 at 12:13:57PM +0200 schrieb Andrius Merkys: > Hi Andreas, > > On 2021-12-23 12:09, Andreas Tille wrote: > > error: Command '['/usr/bin/python3.10', '-m', 'pip', > > '--disable-pip-version-check', 'wheel', '--no-deps', '-w', > > '/tmp/tmp89sdjpdu', '--quiet', 'xmlschema']' re

Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip

2021-12-23 Thread Andrius Merkys
Hi Andreas, On 2021-12-23 12:09, Andreas Tille wrote: > error: Command '['/usr/bin/python3.10', '-m', 'pip', > '--disable-pip-version-check', 'wheel', '--no-deps', '-w', > '/tmp/tmp89sdjpdu', '--quiet', 'xmlschema']' returned non-zero exit status 1. Is Python package providing 'xmlschema' insta

[Advent bug squashing] Thanks to Olivier Sallou: Bug#982036: marked as done (emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal)]

2021-12-23 Thread Andreas Tille
Thanks a lot Olivier -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Thu, 23 Dec 2021 08:18:17 + Source: emboss Binary: emboss emboss-data emboss-dbgsym emboss-doc emboss-lib emboss-lib-dbgsym emboss-test jemboss Architecture: source all amd64 Version: 6.6.0+dfsg-10 Distrib

Somehow some dh_auto_test of Python3 packages insist to install wheel via pip

2021-12-23 Thread Andreas Tille
Hi, seems python-pbcore is just an example[1] for the issue: ... dh_auto_test I: pybuild base:237: python3.10 setup.py test /usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the u