Re: Finishing ncbi-vdb and sra-sdk

2022-10-13 Thread Aaron M. Ucko
Pierre Gruet writes: > I have just pushed some changes. I adopted the -- I believe -- least > invasive solution by creating a new package libngs-jni which depends > on the shared lib package (not the -dev one), only ships a symlink to > the shared lib with full version number, and on which the -j

Re: Finishing ncbi-vdb and sra-sdk

2022-10-13 Thread Pierre Gruet
Hi Aaron, Le 12/10/2022 à 04:48, Aaron M. Ucko a écrit : Pierre Gruet writes: Indeed, this warning should be overridden, usually I do so and add a pointer to the discussion in https://lists.debian.org/debian-java/2018/06/msg00021.html in the comment in the .lintian-overrides file. Got it, t

Re: BART 0.8.0

2022-10-13 Thread Martin Uecker
Hi Andreas, Am Sonntag, den 09.10.2022, 09:39 +0200 schrieb Martin Uecker: > Hi Andreas, > > Am Sonntag, den 09.10.2022, 06:39 +0200 schrieb Andreas Tille: > > > > > I will do this soon, but probably wait in case other issues > > > > emerge with the new packages. > > > > Seems there ar

Re: failed i386 build of fis-gtm 7.0-004-1

2022-10-13 Thread Shah, Amul
Hi Andreas, Thanks for updating to the latest GT.M version! GT.M V7 dropped support for x86 due to the transition to 64bit block IDs. If I could get through the corporate firewall, I would drop i386 from the “Architecture” sections in debian/control. Sorry, about that. Thanks, Amul From: Debia

Re: python3-biopython: incompatible with muscle >= 5

2022-10-13 Thread Andreas Tille
Hi Andrius, Am Thu, Oct 13, 2022 at 12:14:01PM +0300 schrieb Andrius Merkys: > Since the bookworm's freeze is getting closer, I would like to attract > team's attention to bug #1009118 in biopython: Thanks a lot for the reminder! > On Thu, 7 Apr 2022 15:44:43 +0300 Andrius Merkys wrote: > > py

Re: python3-biopython: incompatible with muscle >= 5

2022-10-13 Thread Andrius Merkys
Hello, Since the bookworm's freeze is getting closer, I would like to attract team's attention to bug #1009118 in biopython: On Thu, 7 Apr 2022 15:44:43 +0300 Andrius Merkys wrote: python3-biopython is incompatible with muscle >= 5. I tend to think this is serious-ish as biopython integratio