Re: New name: Call for opinions

ot;, and the DISh playword can help to make things sound more casual when needed. I checked Google and Google Images, and nothing bad comes with "DIS". For "Debian DIS" searches, we will have to compete against the package `dis', however. Have a nice day, -- Charles Plessy Deb

Re: ctn entered lenny

Le Wed, Aug 13, 2008 at 08:55:57AM +0200, Thijs Kinkhorst a écrit : > On Wednesday 13 August 2008 03:08, Charles Plessy wrote: > > > > Normally all DDs have write access, so I will remove you from the > > members. I plan to make a general (gentle) ping after Lenny release.

Re: Two apps

Le Tue, Aug 12, 2008 at 08:03:03PM -0700, Gerardo E. Arnaez a écrit : > On Tue, Aug 12, 2008 at 7:29 PM, Charles Plessy <[EMAIL PROTECTED]> wrote: > > > But maybe I was too pessimistic; let's try to package it as it > > is now. Since it is a Python progra

Re: Two apps

Le Tue, Aug 12, 2008 at 07:20:05PM -0700, Gerardo E. Arnaez a écrit : > On Mon, Aug 11, 2008 at 9:56 PM, Charles Plessy <[EMAIL PROTECTED]> wrote: > > We are not making the final decision if a program is worth being > > packaged or not; it is the administrators of the Debian F

Re: ctn entered lenny

(gentle) ping after Lenny release. Do you mind if I create a list of emeritus members on wiki.debian.org and add you there? When did you join? Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subj

Re: Two apps

t that moment. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: two simples apps

> svn co https://coumadinregimen.svn.sourceforge.net/svnroot/coumadinregimen > coumadinregimen Hi Gerardo, many thanks for putting your sources online. I am not familiar with Python. Is there anyone more qualified on this mailing list who would like to try to package these programs ? Have a nice day, -- Charles Plessy

Re: #467038 ITP: pytrainer - Free Sport Training Center (fwd)

Le Sun, Aug 10, 2008 at 12:12:47AM +0200, Andreas Tille a écrit : > Hi, > > well, not really related to medicine - but I could see some reason > to at least suggest this in med-tools. Or is this to far from our > topic? Hi all, I think that it would fit well with pondus, cycle and mencal in a m

Re: Fixing #493051 (biococoa.app: Contents do not match name and description.) in Lenny.

Le Fri, Aug 08, 2008 at 09:49:20AM +, Yavor Doganov a écrit : > В Fri, 08 Aug 2008 14:25:41 +0900, Charles Plessy написа: > > I just figured out that a new upstream release of gnustep-base was > > uploaded the 17th of July, > > FWIW, this is strictly a bugfix release, an

Re: Fixing #493051 (biococoa.app: Contents do not match name and description.) in Lenny.

ckages built in Sid will not propagate to Lenny anyway because they will depend on the frozen version of libgnustep-base1.16. What shall we do? Update to testing-proposed-update after building it in a Lenny chroot? Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa,

Fixing #493051 (biococoa.app: Contents do not match name and description.) in Lenny.

at least upload an update in which the description of the biococoa.app binary package is corrected. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan diff -u biococoa.app-1.6.0/debian/patches/01_plist.patch biococoa.app-1.6.0/debian/patches/01_plist.patch

BioPuppy

the source packages. Do you know the people behind BioPuppy ? If yes, can you ask them where we can find their sources? Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#493977: ITP: embassy-phylip -- EMBOSS conversions of the programs in the phylip package

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: embassy-phylip Version : 3.67 Upstream Author : The EMBOSS developpers and Joe Felsenstein URL : ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.67.tar.gz L

fastdnaml built but not installed.

Hello, according to http://buildd.debian.org/pkg.cgi?pkg=fastdnaml, the binary packages `fastdnaml' is built but not installed on powerpc. Can you proceed with installation or indicate us how we can help you to solve this problem? Have a nice day, -- Charles Plessy Debian Med packaging

Re: Possible problems in Debian packages your monitor on the PTS (fwd)

s just a matter of time before the copy for [EMAIL PROTECTED] arrived in your mailbox. Apparently, fastdnaml was successfully built, but not installed. If I understand correctly, the procedure is to send an email to [EMAIL PROTECTED] I will do it. Have a nice day, -- Charles Plessy Debian Med pac

.c and .h files installed in /usr/lib/perl5/ !?

/libtfbs-perl/trunk/debian/?rev=0&sc=0 http://packages.debian.org/fr/sid/libtfbs-perl http://tfbs.genereg.net/ Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Tr

Re: Two simple Apps

sting facilities such as SourceForge or bioinformatics.org for instance. Without the source it is hard to give you any interesting answer to your message! Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a

Debian packages available for EMBOSS 6.0.1, in the `experimental' section.

for EMBASSY were built against version 5.0.0 of AJAX and NUCLEUS. Is it necessary to rebuild them against version 6.0.1? have a nice day, -- Charles Plessy Debian Med packaging team http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#492842: Improper dependancies make aeskulap unable to display images on etch/lenny mixtures

Package: aeskulap Version: 0.2.2b1-2 Followup-For: Bug #492842 Hi all, I tried aeskulap on a fresh Lenny install, and it worked well. Perhaps my test system was not properly upgraded? If this hypothesis is true and somebody identifies the proper dependancies for aeskulap, let's see if we can upd

Missing packages in the per-maintainer list ?

Strangely, some packages that show up in the PTS do not appear in the Debtags page. Any hint ? Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Fwd: MIR CTN software

Le Wed, Jul 30, 2008 at 12:36:20AM -0700, Mathieu Malaterre a écrit : > Here is a post from this morning on dicom newsgroup :) > > I guess after all ctn is still active ! > > -- Forwarded message -- > From: Steve Moore <[EMAIL PROTECTED]> > I have placed the CTN software on Source

Bug#493051: biococoa.app: Contents do not match name and description.

sequenceconverter.app. What is your opinion? (I volunteer for the work if you agree). We would probably need a bit of conflicts/replaces/provides magic. PS: we can of course wait for the end of Debconf to take a final decision. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa

Re: [med-svn] r2366 - in trunk/packages/maq/trunk/debian: . patches

Le Wed, Jul 30, 2008 at 09:58:54AM -0300, Nelson A. de Oliveira a écrit : > Hi! > > On Wed, Jul 30, 2008 at 9:52 AM, <[EMAIL PROTECTED]> wrote: > > -Description: maps short fixed-legth polymporphic DNA sequence reads to > > reference sequences > > +Description: maps short fixed-legth polymorphic

Re: [Debian-med-packaging] Bug#492842: aeskulap: LP bug 229681: Aeskulap images not seen

gt; Works fine for me, too. aeskulap (0.2.2b1-2) Thank you very much for your prompt reports. Maybe the problem is that my system is not 100 % fresh Lenny. I will test on a fresh install on my machine (powerpc) this week-end. Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurum

Bug#492842: aeskulap: LP bug 229681: Aeskulap images not seen

Package: aeskulap Version: 0.2.2b1-2 Severity: grave Justification: renders package unusable Hi all, I was browsing aeskulap's PTS page and found the Ubuntu bug 229681: https://bugs.launchpad.net/ubuntu/+source/aeskulap/+bug/229681 Basically, the user complains that aeskulap does not display ima

Re: Roadmap to Lenny.

Le Thu, Jul 24, 2008 at 12:05:09PM +0200, Andreas Tille a écrit : > > I understood > >http://lists.debian.org/debian-devel-announce/2008/07/msg6.html Oh, I was wrong :) -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, ema

Re: Roadmap to Lenny.

Hi Andreas, Le Thu, Jul 24, 2008 at 10:58:52AM +0200, Andreas Tille a écrit : > On Thu, 24 Jul 2008, Charles Plessy wrote: > > >- Getting proper Debtags for our packages. > > I added this point to http://wiki.debian.org/DebianMedTodo . > But effort on this should be do

Roadmap to Lenny.

kages. - Translating the package descriptions. - Translating the menu entries. - Translating the Alioth site. - Polishing the www.debian.org/devel/debian-med web pages. Do not hesitate to discuss those issues on this list when you feel that some coordination is needed! Have a nice day, -- Ch

Re: [med-svn] r2294 - trunk/packages/biojava

Le Wed, Jul 23, 2008 at 01:01:48PM +, [EMAIL PROTECTED] a écrit : > Author: smoe-guest > Date: 2008-07-23 13:01:47 + (Wed, 23 Jul 2008) > New Revision: 2294 > > Modified: >trunk/packages/biojava/ > Log: > Changed property to anonymous checkout. > > > > Property changes on: trunk/pac

Re: Problems to checkout the Debian Med SubVersion repository.

eckout asks me for a password... My Alioth key is secure and up-to-date: if the connection would be made on my account, I would be requested my key's passphrase, not my password. I am a bit clueless... -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUB

Problems to checkout the Debian Med SubVersion repository.

he svn tree, somewhere in my configuration or my alioth account... Does everybody manage to make a fresh checkout ? Have a nice day, -- Charles Plessy Debian Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: [Debian-med-packaging] Progress on the BioJava Front

Hi Manuel, thank you for the help! Le Thu, Jul 17, 2008 at 12:36:07PM +0200, Manuel Prinz a écrit : > Am Mittwoch, den 16.07.2008, 08:50 +0900 schrieb Charles Plessy: > > sorbet【packages】$ LC_ALL=C svn update > > [...] > > As you see, it asks me a password, and the Alioth o

Re: [EMBOSS] EMBOSS 6.0.0 released

Le Thu, Jul 17, 2008 at 11:47:43AM +0200, Andreas Tille a écrit : > On Thu, 17 Jul 2008, Charles Plessy wrote: > > >because the freeze is so near, and because EMBOSS often releases patches > >that would be difficult to push in Stable, I decided to upload the > >latest ver

Re: [EMBOSS] EMBOSS 6.0.0 released

Le Tue, Jul 15, 2008 at 06:51:30PM +0100, [EMAIL PROTECTED] a écrit : > EMBOSS 6.0.0 is now available from: > > ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.0.0.tar.gz Hi all, because the freeze is so near, and because EMBOSS often releases patches that would be difficult to push in Stable, I

Building of the `exonerate' packages on ARM.

arent inactivity. Can you set the timeout treshold to a longer duration, or is there something else I can do to help? Have a nice day, -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". T

Re: [Debian-med-packaging] Progress on the BioJava Front

Le Tue, Jul 15, 2008 at 04:22:42PM +0200, Andreas Tille a écrit : > On Tue, 15 Jul 2008, Charles Plessy wrote: > > >as a result it is not possible > >anymore to make a full checkout if one does not have write access to > >both repositories. > > Huh, why this? Isn

Re: [Debian-med-packaging] Progress on the BioJava Front

-guest" account anymore, can you replace it by "plessy"?) Have a nice day, -- Charles -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: [med-svn] r2220 - trunk/packages/gwyddion/trunk/debian

Le Fri, Jul 11, 2008 at 06:52:08AM +, [EMAIL PROTECTED] a écrit : > Log: > Adding README.source for policy 3.8.0 compliance. Is this enough??? > > > Added: trunk/packages/gwyddion/trunk/debian/README.source > === > --- trunk/pack

Re: Imported io-lib, a Staden library

ntance one's home directory. -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Imported io-lib, a Staden library

all packaged software in their directory with correct handling of the dependancies. Have a nice day, -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#489983: ITP: srf -- generic format for DNA sequence data

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: srf Version : 0.1 Upstream Author : http://srf.sourceforge.net/groups.html <[EMAIL PROTECTED]> URL : http://srf.sourceforge.net/ License : Apache

Re: Imported io-lib, a Staden library

executables but it is only a library). I just uploaded it in our repository: http://svn.debian.org/wsvn/debian-med/trunk/packages/srf/trunk/debian/?rev=0&sc=0 http://srf.sourceforge.net/ -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to

Imported io-lib, a Staden library

Le Tue, Jul 08, 2008 at 10:58:52AM +, [EMAIL PROTECTED] a écrit : > Author: plessy > Date: 2008-07-08 10:58:51 + (Tue, 08 Jul 2008) > New Revision: 2199 > > Added: >trunk/packages/io-lib/trunk/debian/ >trunk/packages/io-lib/trunk/debian/README.Debian >trunk/packages/io-lib/trun

Re: Maq packaging (Was: Maq: Strange 64bit issue)

Le Tue, Jul 08, 2008 at 10:02:35AM +0200, Andreas Tille a écrit : > >1. Renaming *.pl files > Lintian warns about files /usr/bin/*.pl > (script-with-language-extension) > and normally it would be cheap to rename these but in this specific > case we have a binary map an

Bug#489836: ITP: maq -- Mapping and Assembly with Quality

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: maq Version : 0.6.7 Upstream Author : Heng Li <[EMAIL PROTECTED]> URL : http://maq.sourceforge.net/ License : GPL-3 Programming Lang: C Description

Re: [RKI-Spam-Verdacht]Maq: Strange 64bit issue

uit une erreur de sortie de type 2 debuild: fatal error at line 1319: dpkg-buildpackage -rfakeroot -D -us -uc failed Have a nice day, -- Charles Plessy Debian-Med packaging team, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#489678: tree-puzzle: Uses a local copy of libsprng.

libsprng2-dev Have a nice day, -- Charles Plessy, Debian-Med packaging team, Tsurumi, Kanagawa, Japan. -- System Information: Debian Release: lenny/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing') Architecture: powerpc (ppc64) Kernel: Linux 2.6.25-1-po

Extensive reworking of emboss-explorer, proofreeding needed.

Le Sun, Jun 29, 2008 at 02:36:32PM +, [EMAIL PROTECTED] a écrit : > Author: plessy > Date: 2008-06-29 14:36:31 + (Sun, 29 Jun 2008) > New Revision: 2106 > > Added: >trunk/packages/emboss-explorer/trunk/debian/apache.conf >trunk/packages/emboss-explorer/trunk/debian/emboss-explorer

Re: [Debian Wiki] Update of "DebianMed" by MathieuMalaterre

Le Fri, Jun 27, 2008 at 08:57:21AM -, Debian Wiki a écrit : > Dear Wiki user, > > You have subscribed to a wiki page or wiki category on "Debian Wiki" for > change notification. > > The following page has been changed by MathieuMalaterre: > http://wiki.debian.org/DebianMed > > The comment

Re: Broken links

ebian.org/~tille/debian-med/talks/paper-cdd/debian-cdd.html/ replaced by http://people.debian.org/~tille/cdd/ > and > -> http://people.debian.org/~tille/debian-med/talks/paper/debian-med.html replaced by http://people.debian.org/~tille/talks/200707_lsm_med/index_en.html Have a nice day, -

Re: Problem with implicit rule for .o files and overriding of CXXFLAGS.

Le Wed, Jun 25, 2008 at 11:06:09AM +, Yavor Doganov a écrit : > > > OTHERFLAGS = -DVERSION="\"1.00\"" > > CXXFLAGS = -g -W -Wall -pedantic $(OTHERFLAGS) > > Use CPPFLAGS for this -- of course the recipes should be properly written > in order to have some effect. > > authoritative documen

Problem with implicit rule for .o files and overriding of CXXFLAGS.

ll to make to add $(OTHERFLAGS) to this implicite rule. Any idea ? Have a nice day, -- Charles Plessy Debian-Med packaging team Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: I would like to join the mailing list.

an.org/debian-med/ Have a nice day, -- Charles Plessy Debian-Med packaging team Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Bug#487361: ITP: seqan -- A C++ template library for the analysis of sequences.

Le Sat, Jun 21, 2008 at 09:00:16PM +0200, Soeren Sonnenburg a écrit : > what needs to be done to > turn this into a debian-med project? I started packaging in > http://bollin.googlecode.com/svn/seqan/trunk/debian/ but there are still > plenty issues. Hi Soeren, first of all, you can join our gr

Re: Bug#487361: ITP: seqan -- A C++ template library for the analysis of sequences.

We currently maintain ~100 packages, many of them being dedicated to sequence analyis. http://debian-med.alioth.debian.org/ Have a nice day, -- Charles Plessy, Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Bug#487026: ITP: velvet -- Sequence assembler for very short reads

Le Thu, Jun 19, 2008 at 11:52:37PM -0300, Nelson A. de Oliveira a écrit : > Hi! > > On Thu, Jun 19, 2008 at 11:40 PM, Charles Plessy <[EMAIL PROTECTED]> wrote: > > Basically what I did was to disable the building of local zlib, include > > the zlib.h from /usr/inclu

Re: Bug#487026: ITP: velvet -- Sequence assembler for very short reads

Hi all, velvet is now in Debian-Med's repository. http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/?rev=0&sc=0 A historical copy of the git original repository can be found at http://charles.plessy.org/debian/velvet Basically what I did was to disable the building of local zlib,

Re: Bug#487026: ITP: velvet -- Sequence assembler for very short reads

Le Thu, Jun 19, 2008 at 01:38:38PM +0200, Andreas Tille a écrit : > On Thu, 19 Jun 2008, Charles Plessy wrote: > > >A private > >preliminary package that I made for work is available upon request. Unless > >somebody asks for fast-tracking, > > Perhaps you injec

Bug#487026: ITP: velvet -- Sequence assembler for very short reads

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: velvet Version : 0.6.03 Upstream Author : Daniel Zerbino URL : http://www.ebi.ac.uk/~zerbino/velvet/ License : GPL-2+ Programming Lang: C Descr

Re: pkg-emboss import status

Le Wed, Jun 11, 2008 at 09:39:36AM +0200, David Paleino a écrit : > > Sorry for the mess. But, well, we're going to have the code imported :) Hi David, thank you for the import and the subsequent work. I reverted two of your changes: I prefer to keep debhelper 5 until Lenny is released to ease

Bug#485735: Can not serve images of help pages to other computers.

Package: emboss-explorer Version: 2.2.0-5 Severity: normal Hi all, I installed emboss-explorer on my work computer, and wanted to use it from the Macintosh of a colleague. While it worked well in general, it did not manage to serve the emboss logo of the documentation pages. I have the following

Re: pkg-emboss import status

Le Tue, Jun 10, 2008 at 10:16:28AM +0200, David Paleino a écrit : > > I'd like to keep the history -- I'll google a bit more about this. I found this but it did not work in my hands... http://code.google.com/p/svn2svn/source/browse/trunk/svn2svn.py Have a nice day, -- Charles -- To UNSUBS

Re: pkg-emboss import status

Le Tue, Jun 10, 2008 at 09:39:52AM +0200, David Paleino a écrit : > Hi all, > I was trying to fix #485009, and tried to commit to pkg-emboss. It seems like > it's not a valid repository anymore! (it gave me a "permission denied" error, > and I can't find it on Alioth anymore). Hi David, We decid

Re: MIPE and the license of its packaging.

Le Mon, Jun 09, 2008 at 05:10:26PM +0200, Andreas Tille a écrit : > On Mon, 9 Jun 2008, Charles Plessy wrote: > > >I am preparing an upload of MIPE, fixing its BTS bugs (one is RC). There > >is a patch, but according to debian/copyright it is GPL'ed despite MIPE > >b

MIPE and the license of its packaging.

Hi all, I am preparing an upload of MIPE, fixing its BTS bugs (one is RC). There is a patch, but according to debian/copyright it is GPL'ed despite MIPE being LGPL. Would its author(s), Steffen and/or Andreas agree to relicence it before I sumit it in MIPS bugtracker on Sourceforge ? Given the tr

Re: [Debian-med-packaging] minc REMOVED from testing

Le Sat, May 31, 2008 at 01:44:20AM -0500, Steve M. Robbins a écrit : > On Sat, May 31, 2008 at 02:50:32PM +0900, Charles Plessy wrote: > > > Minc has been removed from Lenny because its test suite detects a > > problem with the binaries compiled on sparc and arm, and triggers

Re: [Debian-med-packaging] minc REMOVED from testing

Hi all, Minc has been removed from Lenny because its test suite detects a problem with the binaries compiled on sparc and arm, and triggers the failure of the package building. There is a new upstream release available. Shall we upload it before asking help from the porters? Have a nice day,

Re: Debian Menu transition status

Le Wed, May 28, 2008 at 12:58:16AM +0200, Bill Allombert a écrit : > > 0) /usr/lib/menu-> /usr/share/menu > > There are still 48 packages with menu entries in /usr/lib/menu. > Please fix them. I will consider such packages NMU cand

Bug#482555: ITP: patman -- DNA pattern matcher for short sequences

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: patman Version : 1.2 Upstream Author : Kay Pruefer <[EMAIL PROTECTED]>, Udo Stenzel <[EMAIL PROTECTED]> URL : http://bioinf.eva.mpg.de/patman/ Licen

Re: Giving away CTN

Le Wed, May 21, 2008 at 07:30:03AM +0200, Michael Hanke a écrit : > On Wed, May 21, 2008 at 09:09:23AM +0900, Charles Plessy wrote: > > Le Tue, May 20, 2008 at 07:00:03PM +0200, Thijs Kinkhorst a écrit : > > > I suggest any of the following paths: > > > > > > 1

Re: Giving away CTN

hat it does not work at all ? Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Patch format

Le Mon, May 19, 2008 at 12:27:14PM +0200, Daniel Leidert a écrit : > Am Montag, den 19.05.2008, 13:22 +0900 schrieb Charles Plessy: > > > > I do not understand: the link you gave is for changelogs. > > Yeah, exactly. And a Changelog entry is nothing else than a change >

Re: Patch format

Le Sun, May 18, 2008 at 11:50:37PM +0200, Daniel Leidert a écrit : > Am Sonntag, den 18.05.2008, 12:27 +0200 schrieb David Paleino: > > [..] > > Can we standardize the patch header? Be it quilt, dpatch, $foo, the header > > might be something like: > > > > Author: > > Forwarded: > > Description:

Re: Patch format

nion of Daniel to not encode the status of the patch in its name. Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: How to handle Debian patches

Le Sun, May 18, 2008 at 01:01:09AM +0200, Daniel Leidert a écrit : > > You should further add a good description of the patch to > debian/changelog. This is the first place one will take a look and it > would be good to have a description there too (my personal opinion). Yes, and maybe README.Deb

Re: Patch format (was: [med-svn] r1888 - in trunk/packages/glam2/trunk/debian: . patches)

ised that I forgot to answer to your question. Standardising the fields and their order is definitely a good idea :) Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

How about hosting the avida package in Debian-Science's git repository ?

Hello Miriam, While looking for packages of interest for Debian-Med, we inspected avida and noticed that its upstream homepage changed and that therefore new usptream releases have been missed. How about hosting it in Debian-Science's git repository (Debian-Med thinks that it is borderline for its

Added a FreeDestkop menu entry to imagej.

Le Sat, May 17, 2008 at 05:37:18AM +, [EMAIL PROTECTED] a écrit : > Author: plessy > Date: 2008-05-17 05:37:17 + (Sat, 17 May 2008) > New Revision: 1881 > > Added: >trunk/packages/imagej/trunk/debian/imagej.desktop > > Added: trunk/packages/imagej/trunk/debian/imagej.desktop > ===

Re: How to handle Debian patches

Le Fri, May 16, 2008 at 05:54:32PM +0200, Raphael Hertzog a écrit : > > each patch should have some standardized header on top > stating: > - a description of the patch and its purpose > - the associated bug number > - who wrote the patch > - where it has been forwarded upstream > - sign-off by re

Currently able to commit :)

o the Gforge web interface on Alioth. Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Avida something for us?

Le Fri, May 09, 2008 at 08:48:10AM +0200, Andreas Tille a écrit : > Hi, > > I stumbled upon > > Package: avida-base > Description: Auto-adaptive genetic system for Artificial Life research > Avida is an auto-adaptive genetic system designed > primarily for use as a platform in Digital or > Art

Re: About the latest versions of T-COFFEE in http://www.tcoffee.org/Packages. (fwd)

Le Fri, Feb 08, 2008 at 12:07:04PM +0100, Cedric Notredame a écrit : > Cher Charles, > > The current release is version 5.56, as indicated on the page > http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html, this > release number matches te version number contained in > http://www.t

Re: DPL teams review 2008

Hi Steve, This survey is really a good idea. Le Tue, Apr 29, 2008 at 01:02:40AM +0100, Steve McIntyre a écrit : > > 1. You > -- > > a. What's your name, and where are you from? How long have you been >involved in Debian? I am Charles Plessy, Frenchman living in

Re: Announce

Le Sat, May 03, 2008 at 07:20:34PM +0200, David Paleino a écrit : > http://www.hanskalabs.net/node/7 Hi David, Congratulations ! You already have a lot of experience, so NM will be a good moment to "unlearn what you learnt", and make the knowledge fully yours. Have a nice day, -- Charles --

Re: Extended write permissions for our SVN ?

Le Mon, Apr 28, 2008 at 04:32:00PM +0200, Andreas Tille a écrit : > On Mon, 28 Apr 2008, Charles Plessy wrote: > > >I just checked out the packaging sources of a package related to our > >work, from the pkg-perl repository. I was not member of the Alioth > >pkg-perl pro

Extended write permissions for our SVN ?

Debian-Med's repository? The only problem is that I do not know how to do... Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#478251: ITP: libdata-stag-perl -- Structured Tags datastructures

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: libdata-stag-perl Version : 0.10 Upstream Author : Chris Mungall URL : http://stag.sourceforge.net License : Artistic | GPL-1+ (same terms as perl

[EMAIL PROTECTED]: Bug#477453: ITP: wgerman-medical -- German medical dictionary words for /usr/share/dict]

Just for the record... -- Charles - Forwarded message from Tobias Toedter <[EMAIL PROTECTED]> - Date: Wed, 23 Apr 2008 12:16:05 +0200 From: Tobias Toedter <[EMAIL PROTECTED]> To: [EMAIL PROTECTED] Subject: Bug#477453: ITP: wgerman-medical -- German medical dictionary words for /usr/shar

Re: clustalw manpage

Le Wed, Apr 23, 2008 at 12:34:54PM +0200, Morten Kjeldgaard a écrit : > This is a trivial modification, so once these points are > clarified, "someone" :-) should commit the update. Hi Morten, I am a bit short of online time for the next few weeks, but if you can commit the modifications in the

Re: Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data.

Le Mon, Apr 21, 2008 at 08:25:26AM +0200, Andreas Tille a écrit : > On Mon, 21 Apr 2008, Charles Plessy wrote: > > >Here is a recently published article for some bioinformatical tools. > > Without having read the article: Do you think it is relevant for us > and should we

Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data.

w-naweb.iaea.org/nafa/ipc/public/d4_pbl_6a.html Have a nice day, -- Charles Plessy http://charles.plessy.org Wako, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: New Debian maintainer Charles Plessy

Anìbal Monsalve Salazar, my first sponsor. Have a nice day ! -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: [Debian-med-packaging] Web subscription for gnumed-client package

OTECTED] Hi all, since [EMAIL PROTECTED] is already the Maintainer of gnumed-client, is this subscription useful ? Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: [RFS] libbio-mage-perl

Le Tue, Apr 15, 2008 at 10:20:54AM -0300, Nelson A. de Oliveira a écrit : > Hi! > > On Mon, Apr 14, 2008 at 11:04 AM, Charles Plessy > <[EMAIL PROTECTED]> wrote: > > It is in our SVN repo with a watch file for you to upload the original > > sources. I am still no

[RFS] libbio-mage-perl

NEW. Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Re: Group policy draft

s. Have a nice day, -- Charles Index: policy.xml === --- policy.xml (révision 1738) +++ policy.xml (copie de travail) @@ -14,6 +15,11 @@ [EMAIL PROTECTED] Initial writing +

Software a bit more "medical"

Hi all, I just found another repository of medical software. http://gforge.nci.nih.gov/softwaremap/trove_list.php?form_cat=337 Unfortunately, I am too busy with bioinformatics software for the moment... Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan

Re: JEmboss ?

of emboss-kaptain in my agenda. Maybe we should spam the world with messages saying that Debian-Med is willing to recruit Java experts ? Have a nice day, -- Charles Plessy http://charles.plessy.org Wakō, Saitama, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubsc

Re: Bug#475335: ITP: libbio-mage-perl -- Container module for classes in the MAGE package: MAGE

Le Thu, Apr 10, 2008 at 08:39:39AM +0200, Andreas Tille a écrit : > On Thu, 10 Apr 2008, Charles Plessy wrote: > > >If you are interested by maintaining it in > >your repository, just hijack it :) > > Thanks for your work Charles. I added it to bio-dev task. Was the &

Bug#475335: ITP: libbio-mage-perl -- Container module for classes in the MAGE package: MAGE

Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: libbio-mage-perl Version : 20030502.3 Upstream Author : © 2001-2006 The MicroArray Gene Expression Database Society (MGED) URL : http://mged.sourceforge.net/ L

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