Am Samstag, den 03.10.2009, 12:18 +0200 schrieb Mathieu Malaterre:
On Wed, Sep 30, 2009 at 9:01 PM, Andreas Tille andr...@an3as.eu wrote:
On Wed, Sep 30, 2009 at 02:55:04PM +, Mathieu Malaterre wrote:
+common-build-arch::
+ echo $(pkg_lib): package-name-doesnt-match-sonames
Am Samstag, den 03.10.2009, 13:33 +0200 schrieb Daniel Leidert:
Am Samstag, den 03.10.2009, 12:18 +0200 schrieb Mathieu Malaterre:
On Wed, Sep 30, 2009 at 9:01 PM, Andreas Tille andr...@an3as.eu wrote:
On Wed, Sep 30, 2009 at 02:55:04PM +, Mathieu Malaterre wrote:
+common-build-arch
Am Freitag, den 25.09.2009, 15:30 +0200 schrieb Andreas Tille:
the package infernal contains a watch file saying:
version=3
ftp://infernal.janelia.org/pub/software/infernal/infernal-(.*)\.tar\.gz
Works here (with and without passive mode). However you should handle
rc-versions. Otherwise
Am Freitag, den 14.08.2009, 08:08 +0200 schrieb Andreas Tille:
On Thu, Aug 13, 2009 at 04:03:11PM -0400, K.S. Bhaskar wrote:
GT.M Highly scalable and robust associative memory database platform and
MUMPS implentation?
I like this as short description (and hope it is not to long).
It is
Am Dienstag, den 11.08.2009, 15:55 -0400 schrieb K.S. Bhaskar:
it appears that I should put it in subdirectories of /opt/gtm, but it
could just as easily be argued that it belongs in /usr/local/bin/gtm.
Debian uses /usr. Packages do not put stuff under /usr/local - maybe
except empty
Am Samstag, den 01.08.2009, 23:29 +0900 schrieb Charles Plessy:
[..]
The key problem is that the metadata can evolve independantly of the source
code, and that updating the binary packages just for changing URLs is not
suitable.
Well, if upstream chooses to change a registration URL, they
Andreas Tille wrote:
I also follow the adivise I've got
some years ago to use: 0.0.MMDD - this is nearly save if
upstream starts using real version numbers.
NACK. 0.0.1 0.0.2009XXYY
Really safe is 0~mmdd or even 0+mmdd. This is what I would
suggest. We use this for tarballs
Charles Plessy wrote:
[..]
It will be much much easier for us to track your future updates if you
would invert your versionning dates: MMDD instead of DDMM.
Well, you can simply do this in debian/watch via uversionmangle. Maybe
using conditional subpattern or lookahead/behind
Andreas Tille wrote:
in October last year there was a longish discussion about name space
pollution regarding plink. If you like to spend some time you should
read the complete log of #503367 [1].
I decided to put an end now on this issue to make sure it will
not remain as is for ever and
Andreas Tille wrote:
On Thu, 2 Apr 2009, Daniel Leidert wrote:
[..]
What about using /usr/bin/PLINK? I can't find a requirement in the
policy to use lowercase characters for a binary/script. Maybe I missed
it?
A Plink was discussed and refused [1]
IMO just changing one character
Am Montag, den 09.03.2009, 14:14 +0100 schrieb Mathieu Malaterre:
Thanks to A. Maitland Bottoms for updating the VTK package !
While reading the log of ITK debian package, I think that the bug
also apply to VTK package. AFAIK vtk is installing itself directly in
python-support.
On a
Am Montag, den 09.03.2009, 15:14 +0100 schrieb Daniel Leidert:
Am Montag, den 09.03.2009, 14:14 +0100 schrieb Mathieu Malaterre:
[..]
On a different note, I thought I did the right thing for the
vtkpython manpage, but apparently it is not being picked up.
http://lintian.debian.org
Am Sonntag, den 25.01.2009, 16:55 +0100 schrieb Vincent Fourmond:
[..]
Unfortunately, not yet. I have two small problems in the source tarball:
* jars/netscape.jar
* jars/Acme.jar
I didn't really look deeply into the rest yet, but it seems fine. Do
you have any idea of where I
Andreas Tille wrote:
I try to build a package from mlstdbnet for Debian Med. The
packaging stuff is available here:
[..]
If I build the package I get an error message but failed
to track down the problem:
~ sudo dpkg -i mlstdbnet_2.0.0-1_all.deb
(Reading database ... 341999 files and
Am Dienstag, den 13.01.2009, 13:25 +0100 schrieb Manuel Prinz:
[..]
./lib/xml-apis.jar
Sounds like Xalan, maybe available in libxalan2-java.
JFTR: libxalan2-java ships the symlink. The .jar is in libjaxp1.3-java.
Regards, Daniel
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Am Dienstag, den 13.01.2009, 14:00 +0100 schrieb Andreas Tille:
On Tue, 13 Jan 2009, Vincent Fourmond wrote:
[..]
./lib/Jmol-11.0.2.jar
We have an inofficial package of an outdated version of jmol:
http://debian.wgdd.de/temp/jmol/
That's not a package. You asked for the source and I
Am Donnerstag, den 13.11.2008, 13:37 +0900 schrieb Charles Plessy:
Hi all,
I added the following paragraph to our Policy.
(I suppose it is consensual)
I'm not part of debian-med. However, I hope you don't mind this mail:
[..]
+ sect2
+
Am Donnerstag, den 13.11.2008, 19:47 +0900 schrieb Charles Plessy:
Le Thu, Nov 13, 2008 at 10:42:37AM +0100, Daniel Leidert a écrit :
IMHO this is a misuse of this file. The contents of README.source should
point to unusual/uncommon source handling, including source parts, which
have
Am Montag, den 25.08.2008, 11:46 +0200 schrieb Free Ekanayaka:
Hi,
|--== On Tue, 19 Aug 2008 00:39:03 +0200 (CEST), Andreas Tille [EMAIL
PROTECTED] said:
AT On Mon, 18 Aug 2008, Karsten Hilbert wrote:
Use your energy to write better software, to marketeer the current name.
+1
Sorry for the CC. I was away and missed the discussion :)
Am Mittwoch, den 25.06.2008, 13:24 +0900 schrieb Charles Plessy:
while working on an update to the `proda' package, I realised that a
compilation option, DVERSION=\1.00\, was discarded during the build
of the Debian binary package. The
Am Montag, den 19.05.2008, 13:22 +0900 schrieb Charles Plessy:
Le Sun, May 18, 2008 at 11:50:37PM +0200, Daniel Leidert a écrit :
Am Sonntag, den 18.05.2008, 12:27 +0200 schrieb David Paleino:
[..]
Can we standardize the patch header? Be it quilt, dpatch, $foo, the header
might
Am Montag, den 19.05.2008, 13:00 +0200 schrieb Andreas Tille:
On Mon, 19 May 2008, Daniel Leidert wrote:
Yeah, exactly. And a Changelog entry is nothing else than a change
description ... exactly what you try to achieve - describe, what apatch
does/changes.
I really do not agree
Am Sonntag, den 18.05.2008, 20:02 +0900 schrieb Charles Plessy:
Le Sun, May 18, 2008 at 01:01:09AM +0200, Daniel Leidert a écrit :
You should further add a good description of the patch to
debian/changelog. This is the first place one will take a look and it
would be good to have
Am Sonntag, den 18.05.2008, 12:27 +0200 schrieb David Paleino:
[..]
Can we standardize the patch header? Be it quilt, dpatch, $foo, the header
might be something like:
Author:
Forwarded:
Description:
I personally prefer to follow the GNU coding standards here [1] for
patch descriptions.
Am Samstag, den 17.05.2008, 23:43 +0200 schrieb Andreas Tille:
On Sat, 17 May 2008, Charles Plessy wrote:
since it makes complete sense I propose the followign addition to our
policy:
I also perfectly agree and I might have missed something in the quilt docs
but this aspect seems to be
Am Donnerstag, den 08.05.2008, 09:33 +0200 schrieb Andreas Tille:
http://www.bio.net/bionet/mm/bio-soft/1998-April/018625.html
It seems that biomode is not longer developed and thus I wonder how
much sense it makes to continue maintaining the package in Debian.
I would be perfectly
Am Montag, den 31.03.2008, 08:10 +0200 schrieb Andreas Tille:
I recently learned that file has obviosely no means for detecting biological
data formats. Three months ago we had some discussions about Applied
Biosystems chromatograms[1]. This thread more or less had ended with: We
are
Am Montag, den 31.03.2008, 15:56 +0200 schrieb Andreas Tille:
On Mon, 31 Mar 2008, Daniel Leidert wrote:
As long as there is no agreement with upstream, you can use the
a) x- prefix approach
b) vnd. vendor approach
Both are described in the MIME specification (IIRC i mentioned
Am Montag, den 17.03.2008, 18:53 +0900 schrieb Charles Plessy:
Le Mon, Mar 17, 2008 at 10:03:47AM +0100, Andreas Tille a écrit :
On Mon, 17 Mar 2008, Charles Plessy wrote:
cdbs does not need debian/compat and will chose the highest level
available. I tend to remove compat files those
Am Freitag, den 29.02.2008, 10:58 +0100 schrieb Steffen Moeller:
if some of you could cross-check my packaging of AutoDock, please? Any
feedback that would prevent a rejection from our ftp-gate would be
appreciated. I personally think that it is fine but I have overseen
issues in the past.
Am Freitag, den 01.02.2008, 21:17 +0900 schrieb Charles Plessy:
[..]
If yes, could a SVN guru prevent the .pdf documents from being diffed ?
Not a guru and not sure, but try setting the svn:mime-type property for
the file to application/pdf.
Regards, Daniel
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Am Donnerstag, den 31.01.2008, 10:04 +0900 schrieb Charles Plessy:
Le Wed, Jan 30, 2008 at 06:57:48PM +0100, Daniel Leidert a écrit :
--param man.charmap.use.subset 0
to replace *all* special characters. Otherwise only a subset of the
groff charmap is used and mandb might throw errors
Am Donnerstag, den 31.01.2008, 21:22 +0100 schrieb David Paleino:
[..]
Please take a look at:
http://debian-med.alioth.debian.org/cgi-bin/qareport.cgi
Interesting. Who wrote it?
JFTR: The resulting XHTML is not valid:
Am Mittwoch, den 30.01.2008, 20:37 +0900 schrieb Charles Plessy:
just a few comments:
I would like to add some more.
Le Wed, Jan 30, 2008 at 10:54:18AM +, [EMAIL PROTECTED] a écrit :
Added: trunk/packages/axparafit/trunk/debian/axparafit.1.xml
Am Samstag, den 26.01.2008, 13:50 +0900 schrieb Charles Plessy:
Le Sat, Jan 26, 2008 at 04:32:07AM +, Debian Installer a écrit :
Rejected: dm:[EMAIL PROTECTED] may not upload/NMU source package emboss
[..]
I do not understand why it failed:
- It says dm:[EMAIL PROTECTED], so it
Am Samstag, den 26.01.2008, 23:15 +0900 schrieb Charles Plessy:
Le Sat, Jan 26, 2008 at 02:44:30PM +0100, Daniel Leidert a écrit :
I'm not sure (did not look at dak source), but maybe the
uppercase-starting Yes makes the differences. To my knowledge I just
saw yes as value for XS-DM-Upload
Am Montag, den 21.01.2008, 18:48 +0900 schrieb Charles Plessy:
Le Mon, Jan 21, 2008 at 04:44:52AM +0100, Daniel Leidert a écrit :
[..]
Ok. Here something comes to my mind I forgot to tell you. Vendors are
allowed to use the vnd. prefix (also written in one of the related
MIME RfCs). E.g
Am Montag, den 21.01.2008, 11:58 +0900 schrieb Charles Plessy:
Hi Daniel, many thanks for your precious answers.
I have some more ;)
Le Mon, Jan 21, 2008 at 02:19:33AM +0100, Daniel Leidert a écrit :
Ok, first thing, I guess you are referring to this format:
http
Am Montag, den 21.01.2008, 04:44 +0100 schrieb Daniel Leidert:
Am Montag, den 21.01.2008, 11:58 +0900 schrieb Charles Plessy:
[..]
For the applicaiton/ab1 type, it was a typo. Some sites ask their users
to configure their browsers to use application/abi1, so I will declare
this as an alias
Am Montag, den 21.01.2008, 04:53 +0100 schrieb Daniel Leidert:
[..]
Argh. RfC-compliant:
application/vnd.appliedbiosystems.abif
^
or similar (note the punctuation).
Attached is, what I would suggest, using the short form for comment
(recommended; compare
Am Dienstag, den 15.01.2008, 20:33 +0900 schrieb Charles Plessy:
Le Tue, Jan 15, 2008 at 12:08:35PM +0100, Daniel Leidert a écrit :
What should be necessary?
To check for the presence of words other than `HEADER' in the first line
of pdb files.
Well, I personally think, that we should
Am Dienstag, den 15.01.2008, 14:10 +0100 schrieb Morten Kjeldgaard:
as per .pdb format version 2.3, all records must start with a HEADER
field.
Actually, a valid PDB format file must start with a HEADER record.
All records must start with a max 6 character long record type, i.e.
Am Montag, den 14.01.2008, 09:53 +0100 schrieb Andreas Tille:
On Sun, 13 Jan 2008, Daniel Leidert wrote:
Oh wait, I see you followed my advice and used text/ for the MIME type
and the chemical/* types only seem to be aliases. In this case you
should add:
alias type=chemical/njplot
Am Mittwoch, den 14.11.2007, 23:37 +0100 schrieb Andreas Tille:
On Tue, 13 Nov 2007, Juergen Salk wrote:
Yup. The Debian dcmtk packages are compiled with libwrap support.
So you have to link against libwrap as well.
Thanks to Jürgens hint I got the package builded and nearly
lintian
Am Mittwoch, den 07.11.2007, 09:10 +0100 schrieb Andreas Tille:
[http://people.debian.org/~tille/packages/aeskulap/]
$ autoreconf
/usr/share/aclocal/xmedcon.m4:13: warning: underquoted definition of
AM_PATH_XMEDCON
/usr/share/aclocal/xmedcon.m4:13: run info '(automake)Extending aclocal'
Am Sonntag, den 04.11.2007, 00:36 -0200 schrieb Nelson A. de Oliveira:
Below you will see the output of a (very ugly but functional) script that I
will run weekly. It will gets latest changelogs and watch files from SVN
and verify if we already have the latest upstream version.
Up to date
Am Samstag, den 03.11.2007, 00:31 +0100 schrieb Daniel Leidert:
Am Freitag, den 02.11.2007, 20:27 +0100 schrieb David Paleino:
[..]
I might agree that we save space by avoiding duplication of source code,
yes,
but I find it far less intuitive to, for example, create a patch
Am Freitag, den 02.11.2007, 20:27 +0100 schrieb David Paleino:
I'm recently having some difficulties with our current SVN layout. In fact, I
like more SVN layout 2 (the one used by pkg-perl team, for example), than
ours.
Here's the situation.
Current layout:
- trunk/
-- packages/
Am Dienstag, den 21.08.2007, 23:54 +0900 schrieb Charles Plessy:
Le Tue, Aug 21, 2007 at 10:42:04AM +0200, Steffen Moeller a écrit :
For the direct use of svn-buildpackage it is only the source that is
missing,
isn't it? uscan should in most cases deliver that, probably move it to the
Am Freitag, den 03.08.2007, 14:20 +0200 schrieb Andreas Tille:
On Fri, 3 Aug 2007, Daniel Leidert wrote:
... the log alerady tells, what's going wrong. m4 is missing (see the
configure output and the errors thrown, when m4 is called).
A, thanks for reading out loudly what my computer
Am Freitag, den 03.08.2007, 14:58 +0200 schrieb Daniel Leidert:
[..]
(3) examples/Makefile.am
Should test.csh be run befoore making a distribution? Then you should
play with TESTS and TESTS_ENVIRONMENT variables or the check(-local)
target.
$ fakeroot make distcheck
fails, because you
Am Freitag, den 03.08.2007, 15:22 +0200 schrieb Daniel Leidert:
[..]
Further in Makefile.am: You should better use:
[..]
One more thing. IMHO you can define the (*)OBJS variables easier by
using pattern substitution:
COMP_OBJS = $(COMP_SRCS:.c=.o)
Should AFAIK work with all make
Am Freitag, den 03.08.2007, 13:45 +0200 schrieb Daniel Leidert:
[..]
... the log alerady tells, what's going wrong. m4 is missing (see the
configure output and the errors thrown, when m4 is called).
One word: The configure process should of course fail in this moment.
configure.in uses
Am Samstag, den 10.03.2007, 16:25 +0900 schrieb Charles Plessy:
Le Thu, Mar 08, 2007 at 10:21:58AM +0100, Andreas Tille a écrit :
On Thu, 8 Mar 2007, Charles Plessy wrote:
EMBOSS uses an obsolete version of libpcre and the current packages
based on the work of Matt Hope ship by default
Am Montag, den 29.01.2007, 09:00 +0100 schrieb Andreas Tille:
[GPLed Molekel]
something for our TODO-List, IMHO.
http://lists.alioth.debian.org/pipermail/debichem-devel/2007-January/09.html
Regards, Daniel
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