I just bumped with an htslib fix:
https://github.com/vcflib/tabixpp/releases/tag/v1.1.1
If there is a problem ping me.
Pj.
thanks Andreas! I also bumped vcflib
https://github.com/vcflib/vcflib/releases/tag/v1.0.3
It should build as before.
On Fri, Jan 21, 2022 at 12:17:00PM +0100, Andreas Tille wrote:
> Am Fri, Jan 21, 2022 at 11:45:48AM +0100 schrieb Pjotr Prins:
> > We release sambamba and freebayes wit
Dear all,
We release sambamba and freebayes with updated meson build systems. It
should work for Debian. If not I am happy to troubleshoot.
Pj.
On Wed, Jul 21, 2021 at 12:23:44PM +0200, Steffen Möller wrote:
>
> Yes, please. I know we aim for all architectures, but no one runs
> sambamba on less that 64 bits, so we have not supported that.
>
>all other 64bit platforms would be fine? Like PPC64, mips64el, sparc64,
>and riscv64? Th
Hi Nilesh,
Sambamba co-author here.
On Wed, Jul 21, 2021 at 02:47:17AM +0530, Nilesh Patra wrote:
> Hi,
>
> It came to my notice that sambamba does not list copyright holders,
> and copyrgiht holders of several files are missing.
>
> I wonder if this is a RC bug, since I've seen a few of these
05.21 um 19:18 schrieb Pjotr Prins:
> > I am looking at
> >
> > https://packages.debian.org/sid/amd64/libvcflib-tools/filelist
> >
> > and the R scripts are there. I think it is strange that many tools get
> > installed in /usr/lib/vcflib/bin/ though. Is this poli
:01PM +0200, Pjotr Prins wrote:
> The vcflib installer drops the R scripts
>
> https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189
>
> not sure you'd want those?
>
> Pj.
>
> On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote:
> >
The vcflib installer drops the R scripts
https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189
not sure you'd want those?
Pj.
On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote:
>Thanks for catching this, Steffen!
>A bug report would be appreciated, so we don
On Tue, Feb 23, 2021 at 09:28:48PM +0100, Steffen Möller wrote:
> Hello,
>
> sudo apt-get install guix
> guix install pigx-rnaseq
:)
> indeed installs the pigx-rnaseq library with its R dependencies. It
> installs it all in /gnu, which is somewhat inconvenient, as in "my root
> partition complai
We are organising a 2 day codefest near Bergamo:
http://www.open-bio.org/wiki/EU_Codefest_2012
Registration
http://tecnoparco.org/codefest
It will be fun! Debian packagers can work together, and get others
involved. If you don't come, please pass this on to anyone interested
in hooking up
I did not want to mess with the SVN repo, so I used git. When I used
the info on:
http://debian-med.alioth.debian.org/docs/policy.html#git-tips
the script
/git/debian-med/setup-repository packagename "Description of the package"
creates a repository on alioth, in my home dir, not on
git.deb
Hi,
I updated the MrBayes package for the upcoming 3.2 release. The mb
build system migrated to autoconf and friends. The Debian package sits
in
git+ssh://pjotr-gu...@alioth.debian.org//srv/home/users/pjotr-guest/mrbayes.git
On i386 it builds without sse, which may be wanted, but I think the
The PAML description says now:
Description: Phylogenetic Analysis by Maximum Likelihood (PAML)
PAML is a package of programs for phylogenetic analyses of DNA or
protein sequences using maximum likelihood.
.
PAML is not good for tree making. It may be used to estimate parameters
and test hypot
I also enjoyed the conf. One result is a further collaboration on
EMBOSS bindings to Perl, Python, Ruby and the JVM.
> Cool - but what is rq? I can't find it in SVN nor on our tasks page.
Brilliant tool for parallelized running of programs. Like Gridengine,
or Torque, but *much* simpler to set u
On Fri, Aug 13, 2010 at 08:14:11AM +0900, Charles Plessy wrote:
> What I am asking in option 3 is to ship EMBOSS 6.3.1 in Squeeze. Would it be
> disruptive for your work with BioLib? I am a bit shocked to read that you
> consider that option 3 (distributing EMBOSS 6.3.1 in Squeeze) is
> ???heroic?
I have an interest here, as I am mapping EMBOSS with BioLib - and
versioning plays a role.
Appears to me that supporting Embassy has less of an interest with the
core EMBOSS team. EMBOSS is changing - that is what counts. If anyone
cares to keep Embassy it would make sense to package it with an
ea
I am going to ask on the EMBOSS mailing list.
Pj.
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Hi Prakhar,
How is your effort going? Or did you give up?
Pj.
On Wed, May 19, 2010 at 10:56:52PM +0530, prakhar gaur wrote:
> We want to have a Linux distribution based on Debian, dedicated
> for Bioinformatics research which would be useful for researchers
> and students. In
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