Re: [Debichem-devel] [Outreachy] pymol

Hi Michael and Andreas, The maintainers have responded, now there is apbs-1.4.2 source archive on SourceForge. I'll check it tomorrow. 2016-08-22 22:38 GMT+03:00 Michael Banck : > Hi, > > On Sat, Aug 20, 2016 at 01:19:03PM +0300, merlettaia wrote: > > apbs source releases are

Re: [Debichem-devel] [Outreachy] pymol

Hi, On Sat, Aug 20, 2016 at 01:19:03PM +0300, merlettaia wrote: > apbs source releases are available on github, but they contain both apbs > and pdb2pqr (probably because they both are developed in the same > repository) > https://github.com/Electrostatics/apbs-pdb2pqr/releases > On SourceForge

Re: [Outreachy] pymol

Ahh, seems to be ready - so I'll go on for the sponsoring build and upload. On Sun, Aug 21, 2016 at 01:09:31PM +0300, merlettaia wrote: > Hi Andreas, > I've added copyright information to debian/copyright (for UIUC and various > font files from upstream's layer1/). > Can you check it? I've kept

Re: [Outreachy] pymol

Hi Andreas, I've added copyright information to debian/copyright (for UIUC and various font files from upstream's layer1/). Can you check it? I've kept UIUC license since it differs in 1st paragraph from BSD-3-clause mentioned at d/copyright. Also layer1/FontTTF.h has complex license, I copied it

Re: [Outreachy] pymol

Hi Andreas, I've made testsuite for apbs (I took its own tests "(cd tests; python apbs_tester.py -c test_cases.cfg)", installed them to usr/share/apbs, and made sure that they work when installed). Regarding python interface, which is used by pdb2pqr, it is not present in source archive. apbs

Re: [Outreachy] pymol

Hi Andreas, I've fixed pymol.desktop. There might be some errors with test dependencies, and some tests use pymol's fetch command (which loads pdb files not included to upstream), so I don't sure if they pass on Debian CI server. On schroot they all pass. For now I'll finish apbs. 2016-08-17

Re: [Outreachy] pymol

Hi Andreas, 2016-08-17 10:57 GMT+03:00 Andreas Tille : > Hi Tanya, > > On Tue, Aug 16, 2016 at 08:01:46PM +0300, merlettaia wrote: > > Could you please take a look at pymol? > > I did now. I fixed some minor lintian issues (DEP3, override for > spelling). I also added some

Re: [Outreachy] pymol

Hi Tanya, On Tue, Aug 16, 2016 at 08:01:46PM +0300, merlettaia wrote: > Could you please take a look at pymol? I did now. I fixed some minor lintian issues (DEP3, override for spelling). I also added some Breaks and a versioned dependency which is important for upgrades when splitting a

Re: [Outreachy] pymol

Hi Tanya, On Tue, Aug 16, 2016 at 08:01:46PM +0300, merlettaia wrote: > Could you please take a look at pymol? I'll need some time for building which I do either now or tomorrow morning. > I made almost everything possible, except solving this warnings (but I can > fix them too): > >I:

Re: [Outreachy] pymol

Hi Andreas, Could you please take a look at pymol? I made almost everything possible, except solving this warnings (but I can fix them too): I: pymol: desktop-entry-lacks-keywords-entry usr/share/applications/pymol.desktop W: pymol: command-in-menu-file-and-desktop-file pymol

Re: [Outreachy] pymol

Hi, just to let you know: I have moved pymol to https://anonscm.debian.org/git/debichem/packages/pymol.git and I can care for stripping jquery.js later today. Kind regards Andreas. On Thu, Jul 28, 2016 at 09:54:15AM +0200, Andreas Tille wrote: > Hi once again, > > it seems the

Re: [Outreachy] pymol

Hi once again, it seems the upstream source needs to be repackaged due to the compressed copy of jquery (modules/web/examples/sample13/jquery.js). The fact that a source tarball needs to be repackaged is IMHO a good reason for moving the packaging to Git to make sure that all developers are

Re: [Outreachy] pymol

Hi again, I commited two changes to SVN (fix changelog, remove strange file monkeypatch_distutils.pyc no idea how to do this better). When trying to build in pbuilder this (expectedly) failed due to the pinning to a certain libpng12-0 version which does not exist in debian unstable. I stumbled

Re: [Outreachy] pymol

Hi Tanya, I noticed you have created changelog entries for 1.8.2.1 so you seem to have managed to update the patches and build the new version, right? Could you please merge both entries for 1.8.2.1-1 (UNRELEASED) and 1.8.2.1-2? On Wed, Jul 27, 2016 at 07:44:51PM +0300, merlettaia wrote: > Hi

Re: [Outreachy] pymol

Hi Andreas, For now I wrote simple test which runs over all .py and .pml scripts inside specific directory and tries to run them with pymol with -c flag (for now this script doesn't care if python errors appear during run - it only checks that pymol closes as expected). This is made because some

Re: [Outreachy] pymol

Hi Tanya, [I've added debichem list to CC] On Sun, Jul 24, 2016 at 12:49:18PM +0300, merlettaia wrote: > Hi Andreas, > I've updated upstream version as described in Debian New Maintainer's > Guide, chapter 8.3 ( > https://www.debian.org/doc/manuals/maint-guide/update.en.html#idp40812672) > > Can

[Outreachy] pymol

Hi Andreas, I've updated upstream version as described in Debian New Maintainer's Guide, chapter 8.3 ( https://www.debian.org/doc/manuals/maint-guide/update.en.html#idp40812672) Can you remember what problems you had during upstream update? I had error message about conflict in libpng12-0 and