Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <sa...@tetrinetsucht.de>
* Package name : miniasm Version : 0.2 Upstream Author : Heng Li <l...@me.com> * URL : https://github.com/lh3/miniasm * License : MIT Programming Lang: C Description : ultrafast de novo assembler for long noisy DNA sequencing reads Miniasm is an experimental very fast OLC-based de novo sequence assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads. This software will be maintained by the Debian Med Packaging team.
