Re: Datasets to design autopkgtests for our packages

2022-02-19 Thread Aaron M. Ucko
Andrius Merkys writes: > It depends whether you need simple protein FASTA sequences or > alignments. You may find simple sequences in PDB, for example [1], go to > "Download Files" and FASTA format is just there. AFAIR, PDB data is > freely distributable. Likewise for everything in GenBank/GenPe

Re: Datasets to design autopkgtests for our packages

2022-02-18 Thread Pierre Gruet
Hi Andrius, Le 18/02/2022 à 17:21, Andrius Merkys a écrit : Hi Pierre, On 2022-02-18 17:52, Pierre Gruet wrote: To give a bit of context: I am currently writing autopkgtests for htsjdk, which is one Java library we maintain in the team. Those autopkgtests should test reverse-dependencies to ea

Re: Datasets to design autopkgtests for our packages

2022-02-18 Thread Andrius Merkys
Hi Pierre, On 2022-02-18 17:52, Pierre Gruet wrote: > To give a bit of context: I am currently writing autopkgtests for > htsjdk, which is one Java library we maintain in the team. Those > autopkgtests should test reverse-dependencies to ease upgrades of htsjdk. > > When designing such tests, I w

Datasets to design autopkgtests for our packages

2022-02-18 Thread Pierre Gruet
Hi everyone, To give a bit of context: I am currently writing autopkgtests for htsjdk, which is one Java library we maintain in the team. Those autopkgtests should test reverse-dependencies to ease upgrades of htsjdk. When designing such tests, I would need data to run, let's say, artemis or