Hi all,
I just pushed some changes to build tophat with our version of libbam.
Not sure if the previously mentioned issue in [1] is fixed; can't test,
because my cowbuild just broke. :(
Best,
Fabian
[1]: https://lists.debian.org/debian-med/2014/10/msg4.html
Hi Fabian,
thanks for working on this.
On Mon, Dec 04, 2017 at 02:09:48PM +0100, Fabian Klötzl wrote:
> I just pushed some changes to build tophat with our version of libbam.
> Not sure if the previously mentioned issue in [1] is fixed; can't test,
Thanks to the test suite we now know that the i
Hi Andreas,
On 04.12.2017 17:33, Andreas Tille wrote:
> On Mon, Dec 04, 2017 at 02:09:48PM +0100, Fabian Klötzl wrote:
>> I just pushed some changes to build tophat with our version of libbam.
>> Not sure if the previously mentioned issue in [1] is fixed; can't test,
>
> Thanks to the test suite
Hi Fabian,
On Wed, Dec 06, 2017 at 03:53:09PM +0100, Fabian Klötzl wrote:
> On 04.12.2017 17:33, Andreas Tille wrote:
> >
> > Thanks to the test suite we now know that the issue is not solved yet:
> >
> > $ sh run-unit-test
>
> That should be done with my recent commit; The new samtools versio
On 06.12.2017 16:20, Andreas Tille wrote:
> Hi Fabian,
>
> On Wed, Dec 06, 2017 at 03:53:09PM +0100, Fabian Klötzl wrote:
>> On 04.12.2017 17:33, Andreas Tille wrote:
>>>
>>> Thanks to the test suite we now know that the issue is not solved yet:
>>>
>>> $ sh run-unit-test
>>
>> That should be do
On 04.12.2017 17:33, Andreas Tille wrote:
> Thanks to the test suite we now know that the issue is not solved yet:
>
> $ sh run-unit-test
>
> [2017-12-04 17:28:54] Beginning TopHat run (v2.1.1)
> ---
> [2017-12-04 17:28:54] Checking for Bowtie
>
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