Le Tue, May 05, 2020 at 11:18:51PM +0200, Andreas Tille a écrit :
>
> apt install environment-modules
Yes, but we are under CentOS...
This said, I use Debian Med increasingly with Singularity. I made an
image where I `apt install med-cloud` and use it to make environment
modules that export
On Wed, May 06, 2020 at 04:20:49AM +0900, Charles Plessy wrote:
> > I wonder how users of that software are dealing with this.
>
> In our case we use the environment modules system (modules.sourceforge.net).
Or
apt install environment-modules
Kind regards
Andreas.
--
http://fam-til
Hi Simon,
On Tue, May 05, 2020 at 03:24:12PM +0200, zimoun wrote:
> > I wonder how users of that software are dealing with this.
>
> Personally, I am using on the top of Debian the package manager GNU
> Guix with custom channels for installing these non-free software. It
> helps because it is ea
> On Mon, May 04, 2020 at 10:37:22AM +0900, Charles Plessy wrote:
> >
> > - Upgrades are not drop-in replacements for each other and a laboratory
> >typycally needs to install several versions side-to-side.
Le Tue, May 05, 2020 at 06:52:43AM +0200, Andreas Tille a écrit :
> I wonder how user
Dear,
On Tue, 5 May 2020 at 06:53, Andreas Tille wrote:
> > - Guppy is a moving target, and whichever version we would distribute
> >in Stable is unlikely to satisfy the users a year later.
> >
> > - Upgrades are not drop-in replacements for each other and a laboratory
> >typycally nee
Hi Charles,
thanks a lot for your insight.
On Mon, May 04, 2020 at 10:37:22AM +0900, Charles Plessy wrote:
> Hi Andreas and everybody,
>
> I am a regular user of Guppy. We use it to transform ("basecall") raw
> signal output from the sequencers manufactured by Oxford Nanopore
> Technologies (ON
Hi Andreas and everybody,
I am a regular user of Guppy. We use it to transform ("basecall") raw
signal output from the sequencers manufactured by Oxford Nanopore
Technologies (ONT) to nucleic acid sequence files in the FASTQ format
accepted by many of the tools that we package in Debian Med.
I t
On Sun, May 03, 2020 at 06:05:00PM +0200, Jun Aruga wrote:
> Oxford Nanopore Technology's annual event is 18th , 19th June. After
> registering your account to attend, you can access some useful
> knowledge articles including Guppy on the community site.
> https://nanoporetech.com/lc20
Honestly, I
Oxford Nanopore Technology's annual event is 18th , 19th June. After
registering your account to attend, you can access some useful
knowledge articles including Guppy on the community site.
https://nanoporetech.com/lc20
--
Jun | He - His - Him
On Tue, Apr 28, 2020 at 4:31 PM Andreas Tille wrote:
>
> Hi Ben,
>
> On Tue, Apr 28, 2020 at 03:16:56PM +0200, Ben Tris wrote:
> > I am willing to ask about guppy first,
>
> Thanks a lot.
Thanks!
> > but what address could I use best?
>
> May be you can check out the links Michael has given. Do
Hi Ben,
On Tue, Apr 28, 2020 at 03:16:56PM +0200, Ben Tris wrote:
> I am willing to ask about guppy first,
Thanks a lot.
> but what address could I use best?
May be you can check out the links Michael has given. Does anybody
have some other points of contact? I personally have no idea, sorry.
Hi Ben,
would you volunteer to contact the authors about this?
Thanks a lot in advance
Andreas.
On Tue, Apr 28, 2020 at 03:01:51PM +0200, Ben Tris wrote:
> I was referring to the flappy license, that is mozilla like
> maybe they are willing to change to MPL-2.0 that is GPL compatible
> if
I am willing to ask about guppy first, but what address could I use
best? And I'm afraid that I will not be that convincing, don't know the
exact use and needs for having guppy freed.
On 28-04-20 15:11, Andreas Tille wrote:
> Hi Ben,
>
> would you volunteer to contact the authors about this?
>
> T
I was referring to the flappy license, that is mozilla like
maybe they are willing to change to MPL-2.0 that is GPL compatible
if that research only is a problem, but I think (guess) there are
enough escapes in the license.
I still think there should be a confirmation
that guppy will not be availa
Hi Michael,
thanks a lot for the links. Any volunteer to start some discussion?
As I said: If we do not try nothing will change. People with no
technical skills could contribute by doing so to take some workload
from packagers.
I'll offer a $DRINK at next Debian Med sprint for every attempt to
The guppy binary license is
https://nanoporetech.com/sites/default/files/s3/terms/Nanopore-product-terms-and-conditions-nov2018-v2.pdf
No source code is provided. No competitors of the company may use the
software. Must be for "research use only".
https://github.com/nanoporetech/flappie/blob/maste
On Mon, Apr 27, 2020 at 06:39:44PM +0200, Ben Tris wrote:
> Sorry to pop in.
> I think this license should be reviewed,
What exact license are you talking about. I'm missing a link
to guppy source code including any license.
> unless sure it is not a free license.
> To me it looks like a free so
Sorry to pop in.
I think this license should be reviewed,
unless sure it is not a free license.
To me it looks like a free software license.
Although not understand most.
What is making this license non-free?
On 27-04-20 17:06, Jun Aruga wrote:
> On Mon, Apr 27, 2020 at 4:43 PM Andreas Tille wro
Hi Jun,
On Mon, Apr 27, 2020 at 05:06:41PM +0200, Jun Aruga wrote:
> > this brings up again my point: We *really*, *really* should take the
> > chance right now to ask upstreams for free licensing. The time is good.
> > We just need somebody who is really doing this.
>
> For us, the free licensi
On Mon, Apr 27, 2020 at 4:43 PM Andreas Tille wrote:
>
> Hi again,
>
> this brings up again my point: We *really*, *really* should take the
> chance right now to ask upstreams for free licensing. The time is good.
> We just need somebody who is really doing this.
For us, the free licensing is go
Hi again,
this brings up again my point: We *really*, *really* should take the
chance right now to ask upstreams for free licensing. The time is good.
We just need somebody who is really doing this.
Kind regards
Andreas.
On Mon, Apr 27, 2020 at 04:21:12PM +0200, Michael Crusoe wrote:
>
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