Re: [Debian-med-packaging] How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Charles Plessy
Le Fri, Apr 10, 2020 at 06:07:57AM +0200, Matthias Klumpp a écrit : > > Hmm, if those bed files can easily converted into their textual > representation (which presumably is their preferred form of > modification) just adding a hint that this is possible is probably > enough for Debian. Hi Matthi

Re: How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Matthias Klumpp
Am Do., 9. Apr. 2020 um 20:31 Uhr schrieb Andreas Tille : > > Liubov, > > you are great! :-) > > On Thu, Apr 09, 2020 at 06:21:17PM +0200, Liubov Chuprikova wrote: > > I have just checked the file and as Michael said during the Jitsi meeting, > > Plink (in Debian) uses such a format. I just tried q

Re: How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Charles Plessy
Le Thu, Apr 09, 2020 at 06:21:17PM +0200, Liubov Chuprikova a écrit : > > plink1 --bfile examples/genotypes --recode --tab --out genotypes --noweb > > and back to binary, here three files will be created: *.bed, *.fam, *.bim > (those are in examples folder): > > plink1 --file genotypes --make-be

Re: How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Liubov Chuprikova
On Thu, 9 Apr 2020 at 20:30, Andreas Tille wrote: > Liubov, > > you are great! :-) > :-) I am always happy to help! Regards, Liubov On Thu, Apr 09, 2020 at 06:21:17PM +0200, Liubov Chuprikova wrote: > > I have just checked the file and as Michael said during the Jitsi > meeting, > > Plink (in

Re: How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Andreas Tille
Liubov, you are great! :-) On Thu, Apr 09, 2020 at 06:21:17PM +0200, Liubov Chuprikova wrote: > I have just checked the file and as Michael said during the Jitsi meeting, > Plink (in Debian) uses such a format. I just tried quickly and it's > possible to convert the file back to flat format: > >

Re: How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Liubov Chuprikova
Hi Andreas and Pranav, On Thu, 9 Apr 2020 at 10:06, Andreas Tille wrote: > Hi folks, > > could anybody who works with sequences comment on this? > I have just checked the file and as Michael said during the Jitsi meeting, Plink (in Debian) uses such a format. I just tried quickly and it's possi

How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

2020-04-09 Thread Andreas Tille
Hi folks, could anybody who works with sequences comment on this? In the worst case we would need to remove the bed file from the source archive and as I learned recently fetch it in autopkgtest from remote. Kind regards Andreas. On Wed, Apr 08, 2020 at 09:00:10PM +, Scott Kitterman w