Re: How to convert gb to gbk to get proper input for mauvealigner?

2016-03-15 Thread Andreas Tille
On Fri, Mar 11, 2016 at 09:28:22AM +, Sascha Steinbiss wrote: > >> a colleague of mine relaised that mauvealigner seems to need gbk files > >> when running under Linux (while under Win also gb file is working). This > >> happens when using > >> > >>java -Xmx6g -cp

Re: How to convert gb to gbk to get proper input for mauvealigner?

2016-03-11 Thread Sascha Steinbiss
Hi Andreas and Afif, >> a colleague of mine relaised that mauvealigner seems to need gbk files >> when running under Linux (while under Win also gb file is working). This >> happens when using >> >>java -Xmx6g -cp /usr/share/java/Mauve.jar >> org.gel.mauve.contigs.ContigOrderer -output

Re: How to convert gb to gbk to get proper input for mauvealigner?

2016-03-10 Thread Afif Elghraoui
Hi, Andreas, On الخميس 10 آذار 2016 09:05, Andreas Tille wrote: > Hi, > > a colleague of mine relaised that mauvealigner seems to need gbk files > when running under Linux (while under Win also gb file is working). This > happens when using > >java -Xmx6g -cp /usr/share/java/Mauve.jar >

How to convert gb to gbk to get proper input for mauvealigner?

2016-03-10 Thread Andreas Tille
Hi, a colleague of mine relaised that mauvealigner seems to need gbk files when running under Linux (while under Win also gb file is working). This happens when using java -Xmx6g -cp /usr/share/java/Mauve.jar org.gel.mauve.contigs.ContigOrderer -output OUTPUTDIR -ref REFERENCE.gbk -draft