Maq packaging (Was: Maq: Strange 64bit issue)

2008-07-08 Thread Andreas Tille
On Mon, 7 Jul 2008, Charles Plessy wrote: Anyway, Maq had a nice advertisement in a recent review published in Genome Research, and it is therefore definitely one of the programs we must add to our collection before the end of the year. I just imported a rudimentary packaging in our subversion r

Re: Maq packaging (Was: Maq: Strange 64bit issue)

2008-07-08 Thread Charles Plessy
Le Tue, Jul 08, 2008 at 10:02:35AM +0200, Andreas Tille a écrit : > >1. Renaming *.pl files > Lintian warns about files /usr/bin/*.pl > (script-with-language-extension) > and normally it would be cheap to rename these but in this specific > case we have a binary map an

Re: Maq packaging (Was: Maq: Strange 64bit issue)

2008-07-08 Thread Andreas Tille
On Tue, 8 Jul 2008, Charles Plessy wrote: from the maq manpage, it seems that users are expected to be able to run maq or maq.pl in command line, so they definitely will have to go to /usr/bin. maq.pl is a pipeline that calls many maq programs (themselves called through /usr/bin maq). If this is