Re: Source code of phyutility

2012-02-16 Thread Andreas Tille
[Keeping Debian Med list in CC after having stripped parts written by Stephen.] Hi Stephen, many thanks for keeping me updated about phyutility and that derby.jar is not used any more which makes things for us much more easy. I admit that I'm currently busy with some infrastructure stuff, but

Re: Source code of phyutility

2012-02-16 Thread Karsten Hilbert
1. Our ftpmasters is always asking for the source of binary files inside upstream sources and they regard also pdf files as binary. So could you provide also the LaTeX source for the manual. I have always been wondering what ftpmaster suggests doing in case the PDFs would be generated

Re: Source code of phyutility

2012-02-16 Thread Andreas Tille
On Thu, Feb 16, 2012 at 10:14:39AM +0100, Karsten Hilbert wrote: 1. Our ftpmasters is always asking for the source of binary files inside upstream sources and they regard also pdf files as binary. So could you provide also the LaTeX source for the manual. I have always been

Re: Source code of phyutility

2012-02-15 Thread Stephen Smith
Hi Andreas, Derby requirement should be gone. Hope that helps and let me know if you run into any other issues. Take care, Stephen On 01/31/2012 10:21 AM, Andreas Tille wrote: Hi Stephen, On Tue, Jan 31, 2012 at 09:52:32AM -0500, Stephen Smith wrote: No problems. How about I just change it

Re: Source code of phyutility

2012-01-31 Thread Andreas Tille
On Mon, Jan 30, 2012 at 12:31:04PM -0500, Stephen Smith wrote: There is now a basic ant build file included and I released a new version. Thanks a lot, that's very helpful. One question is that typically, so that it can be run like a normal program without the java -jar phyutlity.jar, I

Re: Source code of phyutility

2012-01-31 Thread Stephen Smith
No problems. How about I just change it from derby to sqlite? I can do that either today or tomorrow but definitely before the end of the week if that would be more helpful. I don't use the derby functionality anymore and sqlite would be easier for users anyway. I would say you can just ignore

Re: Source code of phyutility

2012-01-31 Thread Andreas Tille
Hi Stephen, On Tue, Jan 31, 2012 at 09:52:32AM -0500, Stephen Smith wrote: No problems. How about I just change it from derby to sqlite? I can do that either today or tomorrow but definitely before the end of the week if that would be more helpful. I don't use the derby functionality anymore

Re: Source code of phyutility

2012-01-29 Thread Stephen Smith
Hi Andreas, Great! I have the source on http://code.google.com/p/phyutility. I switched to git and it should be relatively easy to see the main branch. I would be very happy to help however I can. And I am currently working on some bug fixes, etc. Please let me know how best to help in terms

Source code of phyutility

2012-01-28 Thread Andreas Tille
Hi, I would like to package phyutility for Debian. At http://code.google.com/p/phyutility/ I found a downloadable ZIP file which contains the resulting JAR. I also was able to check out the according source code from SVN. However, for packaging purposes a downloadable and equally

Latest version of source code of Phyutility for download?

2011-02-22 Thread Andreas Tille
Hi Stephen, I'm writing on behalf of the Debian Med project which tries to assemble Free Software for bio-medical research in a ready to install form inside the Debian GNU/Linux system (and thus as a consequence into Ubuntu). When trying to work on Prottest I realised that you tool Phyutility is