y a small
proportion of the available resources, but there are many jobs to run.
However, "canu" jobs typically require very large resources so "Slurm"
is used to queue them up for execution. The problem I encountered was
that the saved Slurm queue state was stale after an upg
stuff where Github
> instances put my picture on it, I would probably need a couple of life
> times. ;-P
>
> > > BTW, should we take the message that it makes sense to suggest
> > > slurm-client for canu from your observation?
> >
> > No, because "canu&quo
my picture on it, I would probably need a couple of life
times. ;-P
> > BTW, should we take the message that it makes sense to suggest
> > slurm-client for canu from your observation?
>
> No, because "canu" works without "Slurm":
Yes, it works withou
Am Wed, Nov 01, 2023 at 10:02:24AM + schrieb Tony Travis:
> I didn't say that you gave advice "to use bioconda": I said that I had
> followed your advice 'about installing "canu" under "bioconda3"'.
>
> I needed to fix the problem w
On 01/11/2023 06:28, Andreas Tille wrote:
[...]
@Andreas, I've now removed the "canu" package and followed your advice about
installing "canu" under "bioconda3":
I *never ever* gave any advise to use bioconda.
https://salsa.debian.org/med-team/canu
Hi Tony,
Am Tue, Oct 31, 2023 at 11:13:13AM + schrieb Tony Travis:
> What's the status of "canu"?
Since canu has a test suite issue on arm64 a bug was filed[1].
Since we have no idea about this issue the forwarded the problem
upstream[2].
> The "canu" pack
Hi,
What's the status of "canu"?
The "canu" package in Debian-Med appears to be broken under Ubuntu 22.04
and I see that it has been marked for removal in Nov 2023:
https://tracker.debian.org/pkg/canu
@Andreas, I've now removed the "canu" package an
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