Re: [Debian-med-packaging] Bug#966470: fix for #966470: biobambam2 autopkgtest failures

2020-08-10 Thread Étienne Mollier
Control: tags -1 pending Greetings, I verified it is safe to remove zlib1g-dev from the biobambam2 package dependencies by running the autopkgtest suite with the patched libmaus2, which now pulls zlib1g as dependency of libmaus2-2. The routine-update also pulled the libmaus patch level 2.0.743.

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-10 Thread Étienne Mollier
Hi John, John Marshall, on 2020-08-10 11:04:05 +: > Étienne Mollier wrote: > > After appending the zlib1g-dev package to dependencies of the > > biobambam2 package, > > It is in fact libmaus2 that is dlopening "libz.so", so it would be better to > add to the dependencies of that package, whi

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-10 Thread John Marshall
Étienne Mollier wrote: > I had a look at the autopkgtest failure affecting biobambam2, > and since these segmentation faults were showing up only in my > autopkgtest environment, and not when using the package directly > on my system, it felt like a missing dependency. So I trapped > system calls

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-09 Thread Étienne Mollier
Hi Steffen, Steffen Möller, on 2020-08-09 21:44:23 +0200: > On 09.08.20 18:23, Étienne Mollier wrote: > > Steffen Möller, on 2020-08-08 23:41:18 +0200: > >> Sidenote: How is your Debian Maintainership doing? > > Since the question as been raised during last Friday's > > videoconference meeting, I

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-09 Thread Steffen Möller
Hi Étienne, On 09.08.20 18:23, Étienne Mollier wrote: > Steffen Möller, on 2020-08-08 23:41:18 +0200: >> Local build initiated. > Thanks for the upload, although, if I read my emails properly, > you've been beaten by Andreas at it. Yup. > I received a message from > him some time before about miss

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-09 Thread Étienne Mollier
Hi Steffen, Steffen Möller, on 2020-08-08 23:41:18 +0200: > Local build initiated. Thanks for the upload, although, if I read my emails properly, you've been beaten by Andreas at it. I received a message from him some time before about missing git tags in side branches (again), so should have wa

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-08 Thread Steffen Möller
Hi Étienne, On 08.08.20 22:44, Étienne Mollier wrote: > Hi Steffen, > > Steffen Möller, on 2020-08-08 22:09:05 +0200: >> Yes, please close in the changelog whatever you can close. > Thanks for your thought, just pushed the update in the changelog > hope I'm not too late before upload. Local build

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-08 Thread Étienne Mollier
Hi Steffen, Steffen Möller, on 2020-08-08 22:09:05 +0200: > Yes, please close in the changelog whatever you can close. Thanks for your thought, just pushed the update in the changelog hope I'm not too late before upload. Kind Regards, -- Étienne Mollier Old rsa/3072: 5ab1 4edf 63bb ccff 8b54

Re: fix for #966470: biobambam2 autopkgtest failures

2020-08-08 Thread Steffen Möller
Hi Étienne, that was exceptional. Many thanks! Yes, please close in the changelog whatever you can close. Best, Steffen On 08.08.20 18:54, Étienne Mollier wrote: > Control: tags -1 pending > > Good day, > > I had a look at the autopkgtest failure affecting biobambam2, > and since these segment

fix for #966470: biobambam2 autopkgtest failures

2020-08-08 Thread Étienne Mollier
Control: tags -1 pending Good day, I had a look at the autopkgtest failure affecting biobambam2, and since these segmentation faults were showing up only in my autopkgtest environment, and not when using the package directly on my system, it felt like a missing dependency. So I trapped system ca