Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-25 Thread Giulio Genovese
I did get all the emails, and I also get that emails to andr...@an3as.eu are not delivered. But I guess we all get these emails nevertheless through the Debian mailing list. Thank you for getting this fixed. Much appreciated. For reference, this problem was summarized in the last message of bug #1

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-24 Thread Charles Plessy
By the way, Giulio's Gmail rejects my messages, so maybe somebody can bounce the news to him ? Le Tue, Jun 25, 2024 at 08:40:46AM +0900, Charles Plessy a écrit : > Hi all, > > I just uploaded bcftools with the Python dependencies moved to Recomends > because: > > - they will still be installed

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-24 Thread Charles Plessy
Hi all, I just uploaded bcftools with the Python dependencies moved to Recomends because: - they will still be installed by default, - Bioconda also does not provide them, - I was the one who uploaded the update introducing these dependencies. I can revert the change if there are objections.

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-19 Thread Andreas Tille
Hi again, Am Tue, Jun 18, 2024 at 04:04:21PM -0400 schrieb Giulio Genovese: > My use case is docker images. I basically cannot use the bcftools debian > package anymore to build containers as it balloons the size of the final > image. Appreciate forwarding to the Debian Med team. Thank you. -Giuli

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-18 Thread Giulio Genovese
My use case is docker images. I basically cannot use the bcftools debian package anymore to build containers as it balloons the size of the final image. Appreciate forwarding to the Debian Med team. Thank you. -Giulio On Tue, Jun 18, 2024 at 3:03 PM Andreas Tille wrote: > Hi Giulio, > > I'm forw

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-18 Thread Andreas Tille
Hi Giulio, I'm forwarding this to the Debian Med team since as DPL I have basically stalled my packaging work. My gut feeling tells me that 500MB are not really much on a bioinformatitions machine - specifically since python3-matplotlib seems to be nearly a "default installation" on scientists co