Hi, Charles,
On الخميس 18 حزيران 2015 18:36, Charles Plessy wrote:
I uploaded the package, thanks for preparing this update !
Thanks for uploading. A couple others also contributed to this update; I
just finished it off. :)
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghrao
Hi Afif,
I uploaded the package, thanks for preparing this update !
I attached here the build logs in case they may be useful.
Have a nice day,
Charles
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
python-pysam_0.8.3-1_amd64.bui
Hi, Charles,
On الإثنين 15 حزيران 2015 14:57, Charles Plessy wrote:
Hi Afif,
thanks for the heads-up.
I just updated samtools to version 1.2.
Oh, thank you for doing that. Now there should be nothing to worry about
for compatibility.
I will try to have a look at python-pysam this week,
Le Tue, Jun 09, 2015 at 11:45:29PM -0700, Afif Elghraoui a écrit :
>
> From the release notes to version 0.8.2 [1]:
>
> "Pysam now wraps htslib 1.2.1 and samtools version 1.2"
>
> samtools in unstable is version 1.1. I marked this version as closing this
> bug, but we should get to updating the
Hi Afif,
On Tue, Jun 09, 2015 at 11:45:29PM -0700, Afif Elghraoui wrote:
> >could you please check th eopen bugs of python-pysam
> >whether the patch
> >for #753490 applies to the new version
>
> ok, I will take a look.
Thanks.
> >and even more importantly if the
> >new vesion closes the serio
Hi, Andreas,
On الثلاثاء 9 حزيران 2015 22:59, Andreas Tille wrote:
Hi,
could you please check th eopen bugs of python-pysam
whether the patch
for #753490 applies to the new version
ok, I will take a look.
and even more importantly if the
new vesion closes the serious bug #763218. If this
Hello,
Thanks, both of you, for the comments.
On الثلاثاء 9 حزيران 2015 06:09, Ghislain Vaillant wrote:
Hi guys, just a few additional comments
2015-06-09 9:14 GMT+01:00 Charles Plessy mailto:ple...@debian.org>>:
Hi Afif, thanks a lot for all this work.
No problem.
> W: python-p
Hi,
could you please check th eopen bugs of python-pysam whether the patch
for #753490 applies to the new version and even more importantly if the
new vesion closes the serious bug #763218. If this is the case a soon
upload would be great.
Kind regards
Andreas.
--
http://fam-tille.de
--
Hi guys, just a few additional comments
2015-06-09 9:14 GMT+01:00 Charles Plessy :
> Le Tue, Jun 09, 2015 at 12:38:31AM -0700, Afif Elghraoui a écrit :
> >
> > I was able to build it and clean it up a little more, but the package
> still
> > has some lint:
>
> Hi Afif, thanks a lot for all this w
Le Tue, Jun 09, 2015 at 12:38:31AM -0700, Afif Elghraoui a écrit :
>
> I was able to build it and clean it up a little more, but the package still
> has some lint:
Hi Afif, thanks a lot for all this work.
> W: python-pysam source: dep5-copyright-license-name-not-unique (paragraph at
> line 40)
>
Hello,
On الإثنين 8 حزيران 2015 09:38, Andreas Tille wrote:
Hi,
In any case, I bumped the upstream version and made some changes to the
packaging. I'm having some trouble with pbuilder/cowbuilder building this,
though. It does not install the build-depends in time, so building for me
fails du
Hi,
On Mon, Jun 08, 2015 at 01:47:01AM -0700, Afif Elghraoui wrote:
> >Charles
>
> Thanks, Andreas and Charles; it just looked like someone was in the middle
> of something. There were a bunch of changes that were not in the last upload
> to unstable, so I thought I should ask first.
Asking is p
Hello,
On الأحد 7 حزيران 2015 19:13, Charles Plessy wrote:
Le Sun, Jun 07, 2015 at 09:27:38PM +0200, Andreas Tille a écrit :
As a general rule: I'm positively convinced that any update in VCS is
more than welcome. Please, if anybody sees some move forward in any
package, just do it. I hope
> On Sun, Jun 07, 2015 at 12:07:16PM -0700, Afif Elghraoui wrote:
>
> > I don't want to step on anyone's toes, but if nobody who usually works on
> > this package can take care of it, I would step in and do it. Please just let
> > me know.
Le Sun, Jun 07, 2015 at 09:27:38PM +0200, Andreas Tille
Hi Afif,
On Sun, Jun 07, 2015 at 12:07:16PM -0700, Afif Elghraoui wrote:
> Hi, team,
> A package I'm working on in Debian Med (python-pbcore) has pysam v0.8.1 as a
> run-time dependency, but the version in Debian is stuck at 0.7.7 from stable
> up through unstable. The latest upstream release look
Hi, team,
A package I'm working on in Debian Med (python-pbcore) has pysam v0.8.1
as a run-time dependency, but the version in Debian is stuck at 0.7.7
from stable up through unstable. The latest upstream release looks like
0.8.3.
I don't want to step on anyone's toes, but if nobody who usual
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