Re: status on picard-tools and issue with libsnappy-java

2012-08-15 Thread Andreas Tille
On Wed, Aug 15, 2012 at 09:45:59AM +0200, olivier.sal...@codeless.fr wrote: > > > I tried something along this path and created > > > > git://git.debian.org/debian-med/snappy1.0.3-java.git > > > > However, when doing so I noticed that all downloadable versions > > snappy-java-1.0.3.[1-3].tar.g

Re: status on picard-tools and issue with libsnappy-java

2012-08-15 Thread Andreas Tille
On Wed, Aug 15, 2012 at 09:48:54AM +0200, olivier.sal...@codeless.fr wrote: > By the way, do you plan to package it and update picard-tools or do you > want I take this in charge. > I can do it if you want, it is only a matter of time. I tried to reduce your after-holiday stress by giving it a sta

Re: status on picard-tools and issue with libsnappy-java

2012-08-15 Thread olivier.sal...@codeless.fr
Le 8/14/12 10:57 AM, Andreas Tille a écrit : > Hi, > > On Tue, Aug 14, 2012 at 09:06:46AM +0200, olivier.sal...@codeless.fr wrote: >> Le 8/13/12 1:35 PM, Andreas Tille a écrit : >>> On Mon, Aug 13, 2012 at 08:07:22PM +0900, Charles Plessy wrote: For libsnappy-java, since it still only has 10

Re: status on picard-tools and issue with libsnappy-java

2012-08-15 Thread olivier.sal...@codeless.fr
Le 8/14/12 10:57 AM, Andreas Tille a écrit : > Hi, > > On Tue, Aug 14, 2012 at 09:06:46AM +0200, olivier.sal...@codeless.fr wrote: >> Le 8/13/12 1:35 PM, Andreas Tille a écrit : >>> On Mon, Aug 13, 2012 at 08:07:22PM +0900, Charles Plessy wrote: For libsnappy-java, since it still only has 10

Re: status on picard-tools and issue with libsnappy-java

2012-08-14 Thread Andreas Tille
Hi, On Tue, Aug 14, 2012 at 09:06:46AM +0200, olivier.sal...@codeless.fr wrote: > > Le 8/13/12 1:35 PM, Andreas Tille a écrit : > > On Mon, Aug 13, 2012 at 08:07:22PM +0900, Charles Plessy wrote: > >> For libsnappy-java, since it still only has 10 Popcon users, of which I > >> already > >> contr

Re: status on picard-tools and issue with libsnappy-java

2012-08-14 Thread olivier.sal...@codeless.fr
Le 8/13/12 1:35 PM, Andreas Tille a écrit : > On Mon, Aug 13, 2012 at 08:07:22PM +0900, Charles Plessy wrote: >> For libsnappy-java, since it still only has 10 Popcon users, of which I >> already >> contribute 2 or 3 points because I develop on multiple machines, we can also >> do >> something v

Re: status on picard-tools and issue with libsnappy-java

2012-08-13 Thread Charles Plessy
Le Mon, Aug 13, 2012 at 01:35:43PM +0200, Andreas Tille a écrit : > > Could you please exlpain again the advantage of having libsnappy for the > picard-tools user? It accelerates some operations by compressing temporary data on the fly. The upstream website mentions a time reduction of 25 %. ht

Re: status on picard-tools and issue with libsnappy-java

2012-08-13 Thread Andreas Tille
On Mon, Aug 13, 2012 at 08:07:22PM +0900, Charles Plessy wrote: > > For libsnappy-java, since it still only has 10 Popcon users, of which I > already > contribute 2 or 3 points because I develop on multiple machines, we can also > do > something very "dark side", that is a) downgrade libsnappy-j

Re: status on picard-tools and issue with libsnappy-java

2012-08-13 Thread Charles Plessy
Le Mon, Aug 13, 2012 at 12:30:12PM +0200, olivier.sal...@codeless.fr a écrit : > > Too bad > We could indeed package a libsnappy1.0.3-java (with a conflict on > libsnappy-java, and a recommends on picard-tools) and make picard-tools > depend on this version. Hi Olivier and Andreas, first of

Re: status on picard-tools and issue with libsnappy-java

2012-08-13 Thread olivier.sal...@codeless.fr
Le 8/13/12 11:08 AM, Andreas Tille a écrit : > On Mon, Aug 13, 2012 at 09:27:50AM +0200, olivier.sal...@codeless.fr wrote: >> I copy below the answer from upstream team. >> They will not go to latest snappy version. Seems it was quite difficult >> to integrate it and faced issues. >> >> The proble

Re: status on picard-tools and issue with libsnappy-java

2012-08-13 Thread Andreas Tille
On Mon, Aug 13, 2012 at 09:27:50AM +0200, olivier.sal...@codeless.fr wrote: > I copy below the answer from upstream team. > They will not go to latest snappy version. Seems it was quite difficult > to integrate it and faced issues. > > The problem is snappy-java 1.0.4 breaks its API and is not com

status on picard-tools and issue with libsnappy-java

2012-08-13 Thread olivier.sal...@codeless.fr
I copy below the answer from upstream team. They will not go to latest snappy version. Seems it was quite difficult to integrate it and faced issues. The problem is snappy-java 1.0.4 breaks its API and is not compatible with version 1.0.3 used by picard-tools. At runtime, picard-tools tries to de