[med-svn] [htslib] annotated tag 0.2.0-rc5 created (now 3792f66)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag 0.2.0-rc5 in repository htslib. at 3792f66 (tag) tagging 626a888b16e06b97a792cfc654bfd9e6a35568d5 (commit) replaces 0.2.0-rc4 tagged by John Marshall on Mon Nov

[med-svn] [htslib] 05/08: Merge branch 'develop' into bcftools+calling

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 5d609bcb300ac7935b4d0ea0a52412e45ac793e1 Merge: cf12fba 5d68967 Author: Petr Danecek Date: Thu Nov 28 14:33:39 2013 + Merge branch 'develop'

[med-svn] [htslib] branch pristine-tar updated (5f7c962 -> 777e407)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch pristine-tar in repository htslib. from 5f7c962 pristine-tar data for htslib_0.2.0~rc4.orig.tar.gz new 777e407 pristine-tar data for htslib_0.2.0~rc5.orig.tar.gz The 1 revisions

[med-svn] [htslib] 01/01: pristine-tar data for htslib_0.2.0~rc5.orig.tar.gz

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch pristine-tar in repository htslib. commit 777e40745370ce6223df984b5a0ed21410b7d6f6 Author: Charles Plessy Date: Wed Dec 4 13:38:54 2013 +0900 pristine-tar data for htslib_0.2.0~rc5.orig.tar

[med-svn] [htslib] 04/08: Merge branch 'bcftools+calling' into develop

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 5d68967501fd1ad02f69c1b295ebf6c3af742bbd Merge: 626a888 cf12fba Author: Petr Danecek Date: Thu Nov 28 14:31:31 2013 + Merge branch 'bcftools

[med-svn] [htslib] 02/08: Merge branch 'develop' into bcftools+calling

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit ea407fe326c1a55efe7381b06c29ffee4c6cd2ae Merge: c8ec7cb 626a888 Author: Petr Danecek Date: Mon Nov 25 10:38:24 2013 + Merge branch 'develop'

[med-svn] [htslib] branch develop updated (c8ec7cb -> 7092725)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch develop in repository htslib. from c8ec7cb Merge branch 'bcftools+calling' into develop new 626a888 Use the exact type in realloc(N * sizeof(TYPE*)) new ea407fe Merge b

[med-svn] [htslib] 08/08: New upstream tag; updated changelog.

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 648c82665fce044fe32da4e8e02ed5da308e523c Author: Charles Plessy Date: Wed Dec 4 13:41:04 2013 +0900 New upstream tag; updated changelog. --- de

[med-svn] [htslib] 07/08: Merge branch 'develop' into debian/unstable

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 1a76ced9322496b06f6d509b8b72de3fd894cfe4 Merge: 7b2a2d0 7092725 Author: Charles Plessy Date: Wed Dec 4 13:37:39 2013 +0900 Merge branch 'develop

[med-svn] [htslib] 06/08: Merge branch 'bcftools+calling' into develop

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 70927257cab2788c04dcf68e79910163df177142 Merge: 5d68967 5d609bc Author: Petr Danecek Date: Thu Nov 28 14:34:23 2013 + Merge branch 'bcftools

[med-svn] [htslib] 03/08: sam: New bam_str2flag and bam_flag2str functions for a more user-friendly setting of bitmasks. Removed the default pileup filters (except for BAM_FUNMAP) and moved the filter

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit cf12fbaa2e1958659c9c075d940eb16f698ccefd Author: Petr Danecek Date: Thu Nov 28 11:22:33 2013 + sam: New bam_str2flag and bam_flag2str functi

[med-svn] [htslib] 01/08: Use the exact type in realloc(N * sizeof(TYPE*))

This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 626a888b16e06b97a792cfc654bfd9e6a35568d5 Author: John Marshall Date: Fri Nov 22 15:28:24 2013 + Use the exact type in realloc(N * sizeof(TYP

[med-svn] [htslib] branch debian/unstable updated (7b2a2d0 -> 648c826)

This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch debian/unstable in repository htslib. from 7b2a2d0 Merge branch 'develop' into debian/unstable new 626a888 Use the exact type in realloc(N * sizeof(TYPE*)) new ea407fe

[med-svn] r15418 - trunk/packages/seqan/tags

Author: tille Date: 2013-12-03 20:57:01 + (Tue, 03 Dec 2013) New Revision: 15418 Added: trunk/packages/seqan/tags/1.4.1-2/ Removed: trunk/packages/seqan/tags/1.2-1/ trunk/packages/seqan/tags/1.3-1/ Log: Tagged 1.4.1-2 ___ debian-med-commi

[med-svn] r15417 - trunk/packages/seqan/trunk/debian

Author: tille Date: 2013-12-03 20:55:35 + (Tue, 03 Dec 2013) New Revision: 15417 Modified: trunk/packages/seqan/trunk/debian/changelog Log: Upload to unstable Modified: trunk/packages/seqan/trunk/debian/changelog === --- trun

[med-svn] r15416 - trunk/packages/pcalendar/tags

Author: tille Date: 2013-12-03 20:54:39 + (Tue, 03 Dec 2013) New Revision: 15416 Added: trunk/packages/pcalendar/tags/3.3.0-3/ Removed: trunk/packages/pcalendar/tags/3.2.0-2/ trunk/packages/pcalendar/tags/3.2.0/ Log: Tagged 3.3.0-3 ___ de

[med-svn] r15415 - trunk/packages/pcalendar/trunk/debian

Author: tille Date: 2013-12-03 20:53:38 + (Tue, 03 Dec 2013) New Revision: 15415 Modified: trunk/packages/pcalendar/trunk/debian/changelog trunk/packages/pcalendar/trunk/debian/control Log: Upload to unstable Modified: trunk/packages/pcalendar/trunk/debian/changelog ===

[med-svn] r15414 - trunk/packages/pcalendar/trunk/debian

Author: tille Date: 2013-12-03 20:02:50 + (Tue, 03 Dec 2013) New Revision: 15414 Added: trunk/packages/pcalendar/trunk/debian/ant.properties Modified: trunk/packages/pcalendar/trunk/debian/changelog trunk/packages/pcalendar/trunk/debian/rules Log: Ensure backwards compatible bytecode

[med-svn] [pycorrfit] 02/05: d/rules: remove comments, add DH_VERBOSE

This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository pycorrfit. commit d322b2c4b7ecff18f5d9a7c8037b51eb60ccf618 Author: Alexandre Mestiashvili Date: Tue Dec 3 17:24:19 2013 +0100 d/rules: remove comments, add DH_VERB

[med-svn] [pycorrfit] branch master updated (d26c57c -> 0a64ef8)

This is an automated email from the git hooks/post-receive script. malex-guest pushed a change to branch master in repository pycorrfit. from d26c57c debian/*: initial packaging new 79f2c05 d/rules: try to build docs d/control: added dependendencies to build tex documentation

[med-svn] [pycorrfit] 03/05: d/pycorrfit.docs: install docs

This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository pycorrfit. commit 5188c9767d388e001f977942b972b982042d8eea Author: Alexandre Mestiashvili Date: Tue Dec 3 17:28:10 2013 +0100 d/pycorrfit.docs: install docs --- d

[med-svn] [pycorrfit] 04/05: d/rules: remove existing PDF

This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository pycorrfit. commit c56838c0500ad041df6b6d06682e288b874f9373 Author: Alexandre Mestiashvili Date: Tue Dec 3 17:28:58 2013 +0100 d/rules: remove existing PDF --- deb

[med-svn] [pycorrfit] 01/05: d/rules: try to build docs d/control: added dependendencies to build tex documentation

This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository pycorrfit. commit 79f2c05cd1989b3863a0ac93450c323b021cf626 Author: Alexandre Mestiashvili Date: Mon Dec 2 20:24:18 2013 +0100 d/rules: try to build docs d/cont

[med-svn] [pycorrfit] 05/05: d/pycorrfit.pyremove: remove zero bite files and duplicated documentation

This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository pycorrfit. commit 0a64ef8236c1476f032040d5a4fe22447ac7104d Author: Alexandre Mestiashvili Date: Tue Dec 3 18:06:02 2013 +0100 d/pycorrfit.pyremove: remove zero bit

[med-svn] r15413 - trunk/packages/gdcm/trunk/debian

Author: malat Date: 2013-12-03 17:10:13 + (Tue, 03 Dec 2013) New Revision: 15413 Modified: trunk/packages/gdcm/trunk/debian/control Log: Manual fix for 731252 Modified: trunk/packages/gdcm/trunk/debian/control === --- trunk/pa

[med-svn] r15412 - trunk/packages/orthanc/tags

Author: tille Date: 2013-12-03 15:33:40 + (Tue, 03 Dec 2013) New Revision: 15412 Added: trunk/packages/orthanc/tags/0.7.2-1/ Log: Tagged 0.7.2-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.de

[med-svn] r15411 - trunk/packages/orthanc/trunk/debian

Author: tille Date: 2013-12-03 15:32:28 + (Tue, 03 Dec 2013) New Revision: 15411 Modified: trunk/packages/orthanc/trunk/debian/changelog trunk/packages/orthanc/trunk/debian/control Log: For whatever reason when building in pbuilder unzip was needed as Build-Depends; I also bumped Standa

[med-svn] r15410 - trunk/packages/orthanc/trunk/debian/patches

Author: jodogne-guest Date: 2013-12-03 13:31:16 + (Tue, 03 Dec 2013) New Revision: 15410 Added: trunk/packages/orthanc/trunk/debian/patches/check-endianness Modified: trunk/packages/orthanc/trunk/debian/patches/series Log: integration of a patch for better check of endianness Added: tru

[med-svn] r15409 - in trunk/packages/R: . r-bioc-pasillabamsubset r-bioc-pasillabamsubset/trunk r-bioc-pasillabamsubset/trunk/debian r-bioc-pasillabamsubset/trunk/debian/source

Author: tille Date: 2013-12-03 13:16:13 + (Tue, 03 Dec 2013) New Revision: 15409 Added: trunk/packages/R/r-bioc-pasillabamsubset/ trunk/packages/R/r-bioc-pasillabamsubset/trunk/ trunk/packages/R/r-bioc-pasillabamsubset/trunk/debian/ trunk/packages/R/r-bioc-pasillabamsubset/trunk/de

[med-svn] r15408 - in trunk/packages/orthanc/trunk/debian: . configuration docs patches

Author: jodogne-guest Date: 2013-12-03 11:32:02 + (Tue, 03 Dec 2013) New Revision: 15408 Added: trunk/packages/orthanc/trunk/debian/liborthancclient0.7.README.Debian trunk/packages/orthanc/trunk/debian/liborthancclient0.7.install Removed: trunk/packages/orthanc/trunk/debian/liborthanc

[med-svn] r15407 - trunk/packages/R/r-bioc-iranges/tags

Author: tille Date: 2013-12-03 10:49:03 + (Tue, 03 Dec 2013) New Revision: 15407 Added: trunk/packages/R/r-bioc-iranges/tags/1.20.6-1/ Log: Tagged 1.20.6-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://list

[med-svn] r15406 - in trunk/packages/R/r-bioc-iranges/trunk/debian: . tests

Author: tille Date: 2013-12-03 10:48:16 + (Tue, 03 Dec 2013) New Revision: 15406 Added: trunk/packages/R/r-bioc-iranges/trunk/debian/tests/ trunk/packages/R/r-bioc-iranges/trunk/debian/tests/control trunk/packages/R/r-bioc-iranges/trunk/debian/tests/run-unit-test Modified: trunk/pa