[med-svn] r18724 - in trunk/packages/vsearch/trunk/debian: . patches

2015-02-01 Thread Andreas Tille
Author: tille Date: 2015-02-02 06:56:55 + (Mon, 02 Feb 2015) New Revision: 18724 Added: trunk/packages/vsearch/trunk/debian/patches/fix_optimisation_flags.patch Modified: trunk/packages/vsearch/trunk/debian/changelog trunk/packages/vsearch/trunk/debian/patches/series Log: Do not use -

[med-svn] r18723 - trunk/packages/vsearch/trunk/debian

2015-02-01 Thread Andreas Tille
Author: tille Date: 2015-02-02 06:41:04 + (Mon, 02 Feb 2015) New Revision: 18723 Modified: trunk/packages/vsearch/trunk/debian/changelog Log: There is a new upstream version of vsearch Modified: trunk/packages/vsearch/trunk/debian/changelog

[med-svn] [python-ruffus] 02/03: Imported Upstream version 2.5+dfsg

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 0b7aa4bee5be3d37ab005284c3f5572336fbc89a Author: Andreas Tille Date: Sun Feb 1 21:42:31 2015 +0100 Imported Upstream version 2.5+dfsg --- doc/_bui

[med-svn] [python-ruffus] 03/03: Merge tag 'upstream/2.5+dfsg'

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 4bbf6ca2f666507c59d4535ecf321b7204d34440 Merge: 5677463 0b7aa4b Author: Andreas Tille Date: Sun Feb 1 21:42:57 2015 +0100 Merge tag 'upstream/2.5+d

[med-svn] [python-ruffus] branch pristine-tar updated (ea395df -> 5b797e6)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository python-ruffus. from ea395df pristine-tar data for python-ruffus_2.5.orig.tar.gz new 5b797e6 pristine-tar data for python-ruffus_2.5+dfsg.orig.tar.xz Th

[med-svn] [python-ruffus] 01/01: pristine-tar data for python-ruffus_2.5+dfsg.orig.tar.xz

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository python-ruffus. commit 5b797e6aa46cf08b7d6272350028587085cc55a1 Author: Andreas Tille Date: Sun Feb 1 21:42:57 2015 +0100 pristine-tar data for python-ruffus_2.5+df

[med-svn] [python-ruffus] 01/03: Getting rid of some compressed JS files which are not used anyway

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 5677463568cfe0654ecea6fbfed7d31f87a187e7 Author: Andreas Tille Date: Sun Feb 1 21:41:48 2015 +0100 Getting rid of some compressed JS files which ar

[med-svn] [python-ruffus] branch master updated (c1737c1 -> 4bbf6ca)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. from c1737c1 Use python-all instead of python-all-dev new 5677463 Getting rid of some compressed JS files which are not used anyway new

[med-svn] [python-ruffus] branch upstream updated (8cbe49c -> 0b7aa4b)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository python-ruffus. from 8cbe49c Imported Upstream version 2.5 new 0b7aa4b Imported Upstream version 2.5+dfsg The 1 revisions listed above as "new" are entirely

[med-svn] [python-ruffus] 02/02: Use python-all instead of python-all-dev

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit c1737c1430751c665375b525e96c7f2ee9ea3ed5 Author: Andreas Tille Date: Sun Feb 1 21:15:13 2015 +0100 Use python-all instead of python-all-dev --- de

[med-svn] [python-ruffus] branch master updated (c9d69bc -> c1737c1)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. from c9d69bc Generate doc package new 426c2c9 use libjs-mathjax new c1737c1 Use python-all instead of python-all-dev The 2 revisions

[med-svn] [python-ruffus] 01/02: use libjs-mathjax

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 426c2c9a0f8ce456e3ce36abf81287915e2b9ad0 Author: Andreas Tille Date: Sun Feb 1 20:42:43 2015 +0100 use libjs-mathjax --- debian/control | 3 ++- d

[med-svn] [jaligner] branch master updated (3c17c91 -> 1487205)

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch master in repository jaligner. from 3c17c91 initial debianization new e3a4979 not a native package new 1487205 Add a manpage for our little wrapper script The 2

[med-svn] [jaligner] 01/02: not a native package

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository jaligner. commit e3a497943d1a27afc4d0383ee66e7edfd078a19c Author: Tim Booth Date: Sun Feb 1 18:56:01 2015 + not a native package --- debian/changelog | 2 +-

[med-svn] [jaligner] 02/02: Add a manpage for our little wrapper script

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository jaligner. commit 14872051eb7db5d918da40b82b31197d59e590ca Author: Tim Booth Date: Sun Feb 1 19:10:01 2015 + Add a manpage for our little wrapper script --- d

[med-svn] [trinityrnaseq] 01/03: more Jellyfish path fixes

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit ce5f9e7dd2ef1b9a6229046d6d8ee26fa56ed982 Author: Michael R. Crusoe Date: Sun Feb 1 13:43:10 2015 -0500 more Jellyfish path fixes --- debia

[med-svn] [trinityrnaseq] 03/03: include postinstall tests

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit c84735e81d924f6931fb367316e042f62f94c031 Author: Michael R. Crusoe Date: Sun Feb 1 14:00:45 2015 -0500 include postinstall tests --- debia

[med-svn] [trinityrnaseq] 02/03: include Analysis directory

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit 4c0588277c39f499465601b5f79583242e2a70fd Author: Michael R. Crusoe Date: Sun Feb 1 13:59:53 2015 -0500 include Analysis directory --- debi

[med-svn] [trinityrnaseq] branch master updated (f471104 -> c84735e)

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository trinityrnaseq. from f471104 Butterfly new ce5f9e7 more Jellyfish path fixes new 4c05882 include Analysis directory new c84735e inc

[med-svn] [jaligner] 01/01: initial debianization

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository jaligner. commit 3c17c9180ceebcec4235f9ce9fb426080da5193f Author: Tim Booth Date: Sun Feb 1 18:53:41 2015 + initial debianization --- debian/bin/jaligner |

[med-svn] [jaligner] branch master updated (fc41bfe -> 3c17c91)

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch master in repository jaligner. from fc41bfe Imported Upstream version 1.0 new 3c17c91 initial debianization The 1 revisions listed above as "new" are entirely new to this

[med-svn] [jaligner] 01/01: pristine-tar data for jaligner_1.0.orig.tar.gz

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch pristine-tar in repository jaligner. commit f1f219923e6a14b7568e988c0735ebf024cd9fea Author: Tim Booth Date: Sun Feb 1 18:50:09 2015 + pristine-tar data for jaligner_1.0.orig.tar.

[med-svn] [jaligner] branch master created (now fc41bfe)

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch master in repository jaligner. at fc41bfe Imported Upstream version 1.0 This branch includes the following new commits: new fc41bfe Imported Upstream version 1.0 The 1

[med-svn] [jaligner] branch pristine-tar created (now f1f2199)

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch pristine-tar in repository jaligner. at f1f2199 pristine-tar data for jaligner_1.0.orig.tar.gz This branch includes the following new commits: new f1f2199 pristine-tar

[med-svn] [jaligner] annotated tag upstream/1.0 created (now 0127bbd)

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to annotated tag upstream/1.0 in repository jaligner. at 0127bbd (tag) tagging fc41bfe1e51b2429ca0bf04073c8b5347de748a2 (commit) tagged by Tim Booth on Sun Feb 1 18:50:09 2015

[med-svn] [jaligner] branch upstream created (now fc41bfe)

2015-02-01 Thread Timothy Booth
This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a change to branch upstream in repository jaligner. at fc41bfe Imported Upstream version 1.0 This branch includes the following new commits: new fc41bfe Imported Upstream version 1.0 The

[med-svn] r18722 - trunk/community/edam

2015-02-01 Thread Steffen Möller
Author: moeller Date: 2015-02-01 18:49:33 + (Sun, 01 Feb 2015) New Revision: 18722 Modified: trunk/community/edam/registry-tool.py Log: EDAM: Added placeholder uri->term routine Modified: trunk/community/edam/registry-tool.py ===

[med-svn] [khmer] branch master updated (b3b0c24 -> 16004ae)

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository khmer. from b3b0c24 Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/khmer new 0d3a568 parrall attempt new 16004ae remove u

[med-svn] [khmer] 02/02: remove unused createmanpages script

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit 16004aec3fcba65b51050fe4e1708ae93a4a9780 Author: Michael R. Crusoe Date: Sun Feb 1 13:34:11 2015 -0500 remove unused createmanpages script --- deb

[med-svn] [khmer] 01/02: parrall attempt

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit 0d3a568eee1c86fc5c547bd6a501f6decb8c84df Author: Michael R. Crusoe Date: Sat Jan 31 17:23:29 2015 -0500 parrall attempt --- debian/rules | 2 +- 1

[med-svn] [trinityrnaseq] branch master updated (4f7469d -> f471104)

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository trinityrnaseq. from 4f7469d build Butterfly new f471104 Butterfly The 1 revisions listed above as "new" are entirely new to this repository and will

[med-svn] [trinityrnaseq] 01/01: Butterfly

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit f4711047996544131f9ec269cdddabdabce5 Author: Michael R. Crusoe Date: Sun Feb 1 12:04:26 2015 -0500 Butterfly --- debian/copyright

[med-svn] r18721 - trunk/community/edam

2015-02-01 Thread Steffen Möller
Author: moeller Date: 2015-02-01 18:03:45 + (Sun, 01 Feb 2015) New Revision: 18721 Removed: trunk/community/edam/debian2edam Log: debian2edam is superseeded by what is currently named registry-tool.py Deleted: trunk/community/edam/debian2edam ===

[med-svn] [trinityrnaseq] 02/03: follow original layout

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit 8332cc12badc3a69eb066557434036aeadc2012e Author: Michael R. Crusoe Date: Sun Feb 1 08:03:24 2015 -0500 follow original layout --- debian/r

[med-svn] [trinityrnaseq] 01/03: use system jellyfish binary

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit f8698bf1e420c4673e9740f07efa7b37ecd5c718 Author: Michael R. Crusoe Date: Sun Feb 1 04:37:52 2015 -0500 use system jellyfish binary --- deb

[med-svn] [trinityrnaseq] branch master updated (9062526 -> 4f7469d)

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository trinityrnaseq. from 9062526 update VCS new f8698bf use system jellyfish binary new 8332cc1 follow original layout new 4f7469d buil

[med-svn] [trinityrnaseq] 03/03: build Butterfly

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq. commit 4f7469d1ec99456f64d05340d3201e3be637b798 Author: Michael R. Crusoe Date: Sun Feb 1 10:23:43 2015 -0500 build Butterfly --- debian/control

[med-svn] r18720 - in trunk/packages/macsyfinder/trunk: . debian debian/source

2015-02-01 Thread Néron Bertrand
Author: bneron-guest Date: 2015-02-01 15:50:38 + (Sun, 01 Feb 2015) New Revision: 18720 Added: trunk/packages/macsyfinder/trunk/debian/ trunk/packages/macsyfinder/trunk/debian/changelog trunk/packages/macsyfinder/trunk/debian/compat trunk/packages/macsyfinder/trunk/debian/control

[med-svn] r18718 - in trunk/packages: . macsyfinder

2015-02-01 Thread Néron Bertrand
Author: bneron-guest Date: 2015-02-01 15:50:22 + (Sun, 01 Feb 2015) New Revision: 18718 Added: trunk/packages/macsyfinder/ trunk/packages/macsyfinder/tags/ Log: [svn-inject] Creating macsyfinder/tags/ directory. ___ debian-med-commit mailing

[med-svn] r18719 - trunk/packages/macsyfinder

2015-02-01 Thread Néron Bertrand
Author: bneron-guest Date: 2015-02-01 15:50:32 + (Sun, 01 Feb 2015) New Revision: 18719 Added: trunk/packages/macsyfinder/trunk/ Log: Creating trunk directory ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://li

[med-svn] [python-ruffus] 01/01: Generate doc package

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit c9d69bc7f938fc3ca813898fa4a54636c9f8265c Author: Andreas Tille Date: Sun Feb 1 16:34:41 2015 +0100 Generate doc package --- debian/control | 24 ++

[med-svn] [python-ruffus] branch master updated (4b14e41 -> c9d69bc)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. from 4b14e41 Create python3 package as well new c9d69bc Generate doc package The 1 revisions listed above as "new" are entirely new to this re

[med-svn] r18717 - trunk/packages/vsearch/trunk/debian

2015-02-01 Thread Andreas Tille
Author: tille Date: 2015-02-01 15:16:11 + (Sun, 01 Feb 2015) New Revision: 18717 Modified: trunk/packages/vsearch/trunk/debian/README.source trunk/packages/vsearch/trunk/debian/changelog Log: Add proper information for data files Modified: trunk/packages/vsearch/trunk/debian/README.sou

[med-svn] r18716 - trunk/packages/vsearch/tags

2015-02-01 Thread Andreas Tille
Author: tille Date: 2015-02-01 15:14:30 + (Sun, 01 Feb 2015) New Revision: 18716 Added: trunk/packages/vsearch/tags/1.0.7+dfsg-1/ Removed: trunk/packages/vsearch/tags/1.0.7+dfsg-1/ Log: Properly tag what was uploaded ___ debian-med-commit ma

[med-svn] r18715 - in trunk/packages/vsearch/trunk/debian: . tests

2015-02-01 Thread Andreas Tille
Author: tille Date: 2015-02-01 15:12:52 + (Sun, 01 Feb 2015) New Revision: 18715 Added: trunk/packages/vsearch/trunk/debian/README.test Modified: trunk/packages/vsearch/trunk/debian/README.source trunk/packages/vsearch/trunk/debian/changelog trunk/packages/vsearch/trunk/debian/cont

[med-svn] r18714 - trunk/packages/aragorn/trunk/debian/upstream

2015-02-01 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-02-01 15:07:53 + (Sun, 01 Feb 2015) New Revision: 18714 Modified: trunk/packages/aragorn/trunk/debian/upstream/edam Log: indentation Modified: trunk/packages/aragorn/trunk/debian/upstream/edam

[med-svn] [python-ruffus] 02/02: Create python3 package as well

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 4b14e41580d19a92b5dd6515f283a4719733723d Author: Andreas Tille Date: Sun Feb 1 15:56:30 2015 +0100 Create python3 package as well --- debian/contr

[med-svn] [python-ruffus] branch master updated (edb66c5 -> 4b14e41)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. from edb66c5 Proper copyright information new 2dc27fa Get some kind of package new 4b14e41 Create python3 package as well The 2 revi

[med-svn] [python-ruffus] 01/02: Get some kind of package

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 2dc27fafd2445535a679c0ad37983be58f7d1fb2 Author: Andreas Tille Date: Sun Feb 1 15:41:31 2015 +0100 Get some kind of package --- debian/control | 1

[med-svn] r18713 - trunk/packages/barrnap-data-nonfree/trunk/debian

2015-02-01 Thread Steffen Möller
Author: moeller Date: 2015-02-01 14:54:14 + (Sun, 01 Feb 2015) New Revision: 18713 Modified: trunk/packages/barrnap-data-nonfree/trunk/debian/ trunk/packages/barrnap-data-nonfree/trunk/debian/changelog Log: barnap-data-nonfree - first upload Property changes on: trunk/packages/barrnap-

[med-svn] [python-ruffus] 01/01: Proper copyright information

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit edb66c5740f1a9340583642b542e43c5b0fcda59 Author: Andreas Tille Date: Sun Feb 1 15:33:27 2015 +0100 Proper copyright information --- debian/changel

[med-svn] [python-ruffus] branch master updated (0bc90bc -> edb66c5)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. from 0bc90bc Citation data new edb66c5 Proper copyright information The 1 revisions listed above as "new" are entirely new to this repository

[med-svn] r18712 - trunk/packages/barrnap/trunk/debian

2015-02-01 Thread Steffen Möller
Author: moeller Date: 2015-02-01 14:31:34 + (Sun, 01 Feb 2015) New Revision: 18712 Removed: trunk/packages/barrnap/trunk/debian/files Modified: trunk/packages/barrnap/trunk/debian/changelog Log: Preparing for the upload of barnap. Modified: trunk/packages/barrnap/trunk/debian/changelog

[med-svn] [python-ruffus] branch master updated (f9ba7cd -> 0bc90bc)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. from f9ba7cd Add packaging skeleton new 0bc90bc Citation data The 1 revisions listed above as "new" are entirely new to this repository and wi

[med-svn] [python-ruffus] 01/01: Citation data

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit 0bc90bc46b8ed83b339b75d00da6b6b32a3529b3 Author: Andreas Tille Date: Sun Feb 1 15:27:09 2015 +0100 Citation data --- debian/upstream/metadata | 22

[med-svn] [python-ruffus] 01/01: pristine-tar data for python-ruffus_2.5.orig.tar.gz

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository python-ruffus. commit ea395dffc16e705720dd23a0350e0506632b6e5c Author: Andreas Tille Date: Sun Feb 1 15:16:25 2015 +0100 pristine-tar data for python-ruffus_2.5.or

[med-svn] [python-ruffus] branch pristine-tar created (now ea395df)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository python-ruffus. at ea395df pristine-tar data for python-ruffus_2.5.orig.tar.gz This branch includes the following new commits: new ea395df pristine-t

[med-svn] [python-ruffus] annotated tag upstream/2.5 created (now 270c0a6)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/2.5 in repository python-ruffus. at 270c0a6 (tag) tagging 8cbe49cfda3d4c00932e25b6bad53c2c9a7de4c4 (commit) tagged by Andreas Tille on Sun Feb 1 15:16:25 20

[med-svn] [python-ruffus] branch upstream created (now 8cbe49c)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository python-ruffus. at 8cbe49c Imported Upstream version 2.5 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.deb

[med-svn] [python-ruffus] 02/02: Add packaging skeleton

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository python-ruffus. commit f9ba7cd0fd159ef7fccd88501dabadce4f1f72d2 Author: Andreas Tille Date: Sun Feb 1 15:19:16 2015 +0100 Add packaging skeleton --- debian/changelog

[med-svn] [python-ruffus] branch master created (now f9ba7cd)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository python-ruffus. at f9ba7cd Add packaging skeleton This branch includes the following new commits: new 8cbe49c Imported Upstream version 2.5 new f9b

[med-svn] [libvcflib] branch master updated (7b266d6 -> 2816f5f)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libvcflib. from 7b266d6 Needs https://github.com/ekg/tabixpp new 2816f5f Some skeleton for libtabixpp is now in Git The 1 revisions listed above as "new" are

[med-svn] [libvcflib] 01/01: Some skeleton for libtabixpp is now in Git

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libvcflib. commit 2816f5f7013c0850f9291adb2def9747f37257b3 Author: Andreas Tille Date: Sun Feb 1 14:58:49 2015 +0100 Some skeleton for libtabixpp is now in Git --- debi

[med-svn] [libtabixpp] branch master updated (f6dfb9c -> c8b702c)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libtabixpp. from f6dfb9c Imported Upstream version 0.0.20141119 new c8b702c Add some very raw packaging template far from being a sensible packaging The 1 r

[med-svn] [libtabixpp] 01/01: Add some very raw packaging template far from being a sensible packaging

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libtabixpp. commit c8b702c64d9daa16d83b8cf82e02b76e577bef3a Author: Andreas Tille Date: Sun Feb 1 14:57:39 2015 +0100 Add some very raw packaging template far from being

[med-svn] [libtabixpp] branch pristine-tar created (now eda3bce)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository libtabixpp. at eda3bce pristine-tar data for libtabixpp_0.0.20141119.orig.tar.xz This branch includes the following new commits: new eda3bce pristin

[med-svn] [libtabixpp] annotated tag upstream/0.0.20141119 created (now 517f54b)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/0.0.20141119 in repository libtabixpp. at 517f54b (tag) tagging f6dfb9c42af26fbe1e872da71df5f039afef23d3 (commit) tagged by Andreas Tille on Sun Feb 1 14:53

[med-svn] [libtabixpp] branch upstream created (now f6dfb9c)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository libtabixpp. at f6dfb9c Imported Upstream version 0.0.20141119 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/g

[med-svn] [libtabixpp] branch master created (now f6dfb9c)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libtabixpp. at f6dfb9c Imported Upstream version 0.0.20141119 This branch includes the following new commits: new f6dfb9c Imported Upstream version 0.0.20

[med-svn] [libtabixpp] 01/01: pristine-tar data for libtabixpp_0.0.20141119.orig.tar.xz

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository libtabixpp. commit eda3bce720594d919b80055e5044b74a55f642e2 Author: Andreas Tille Date: Sun Feb 1 14:53:24 2015 +0100 pristine-tar data for libtabixpp_0.0.20141119

[med-svn] [libvcflib] 01/01: Needs https://github.com/ekg/tabixpp

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libvcflib. commit 7b266d6596d3b676cc656f4bd60efe39bef3 Author: Andreas Tille Date: Sun Feb 1 14:41:41 2015 +0100 Needs https://github.com/ekg/tabixpp --- debian/cha

[med-svn] [libvcflib] branch master updated (f124b3a -> 7b266d6)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libvcflib. from f124b3a Add lincense information new 7b266d6 Needs https://github.com/ekg/tabixpp The 1 revisions listed above as "new" are entirely new to t

[med-svn] [libvcflib] branch master updated (ae71e5c -> f124b3a)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libvcflib. from ae71e5c Add some description new f124b3a Add lincense information The 1 revisions listed above as "new" are entirely new to this repository a

[med-svn] [libvcflib] 01/01: Add lincense information

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libvcflib. commit f124b3a20556fb243b8c23170ec69b9634b4d526 Author: Andreas Tille Date: Sun Feb 1 14:23:33 2015 +0100 Add lincense information --- debian/copyright | 32

[med-svn] [sga] branch debian updated (ab8aa04 -> 400dc7d)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch debian in repository sga. from ab8aa04 Work a bit into testing (far from finishing) new 400dc7d Add http://www.ruffus.org.uk/ to todo list The 1 revisions listed above as "new" a

[med-svn] [sga] 01/01: Add http://www.ruffus.org.uk/ to todo list

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch debian in repository sga. commit 400dc7d3057889d2754e19a481b126bf6cd0ec28 Author: Andreas Tille Date: Sun Feb 1 14:21:09 2015 +0100 Add http://www.ruffus.org.uk/ to todo list --- debian/cha

[med-svn] r18711 - in trunk/packages/galaxy/trunk/debian/apache-proxy-files/etc/apache2: . conf-available

2015-02-01 Thread Timothy Booth
Author: tbooth-guest Date: 2015-02-01 13:09:28 + (Sun, 01 Feb 2015) New Revision: 18711 Added: trunk/packages/galaxy/trunk/debian/apache-proxy-files/etc/apache2/conf-available/ trunk/packages/galaxy/trunk/debian/apache-proxy-files/etc/apache2/conf-available/galaxy.conf trunk/packag

[med-svn] r18710 - in trunk/packages/galaxy/trunk/debian: . apache-proxy-files/etc/galaxy-server apache-proxy-files/usr/share/galaxy-server apache-proxy-files/usr/share/galaxy-server/logout apache-pro

2015-02-01 Thread Timothy Booth
Author: tbooth-guest Date: 2015-02-01 13:04:21 + (Sun, 01 Feb 2015) New Revision: 18710 Added: trunk/packages/galaxy/trunk/debian/apache-proxy-files/usr/share/galaxy-server/static/ trunk/packages/galaxy/trunk/debian/apache-proxy-files/usr/share/galaxy-server/static/logout1.html trun

[med-svn] r18709 - trunk/community/edam

2015-02-01 Thread Hervé MENAGER
Author: hmenager-guest Date: 2015-02-01 13:03:34 + (Sun, 01 Feb 2015) New Revision: 18709 Added: trunk/community/edam/registry-tool.py Modified: trunk/community/edam/debian2edam Log: registry-tool.py, draft for a python based json generation. Modified: trunk/community/edam/debian2edam

[med-svn] r18708 - trunk/community/edam/test/test_muscle/debian/upstream

2015-02-01 Thread Hervé MENAGER
Author: hmenager-guest Date: 2015-02-01 13:01:01 + (Sun, 01 Feb 2015) New Revision: 18708 Modified: trunk/community/edam/test/test_muscle/debian/upstream/edam Log: fix formats list in the muscle desc. sample Modified: trunk/community/edam/test/test_muscle/debian/upstream/edam

[med-svn] [libvcflib] branch master updated (c80f32c -> ae71e5c)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libvcflib. from c80f32c Raw packaging template new ae71e5c Add some description The 1 revisions listed above as "new" are entirely new to this repository and

[med-svn] [libvcflib] 01/01: Add some description

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libvcflib. commit ae71e5c8ca2fe90a4074612938e72cf64a6bad0f Author: Andreas Tille Date: Sun Feb 1 12:02:42 2015 +0100 Add some description --- debian/control

[med-svn] [freebayes] 01/01: Add comment that packaging of vcslib has started

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository freebayes. commit 50887db3e4c2a18cddeb8a769a4242b60e195c55 Author: Andreas Tille Date: Sun Feb 1 11:56:24 2015 +0100 Add comment that packaging of vcslib has started ---

[med-svn] [freebayes] branch master updated (5d04db5 -> 50887db)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository freebayes. from 5d04db5 Merge tag 'upstream/0.9.20' new 50887db Add comment that packaging of vcslib has started The 1 revisions listed above as "new" are en

[med-svn] [libvcflib] branch master created (now c80f32c)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository libvcflib. at c80f32c Raw packaging template This branch includes the following new commits: new 47d8807 Imported Upstream version 0.0.20141212 new

[med-svn] [libvcflib] annotated tag upstream/0.0.20141212 created (now 92ccdca)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/0.0.20141212 in repository libvcflib. at 92ccdca (tag) tagging 47d88078ab2af69a961d344ac607a4e05a790980 (commit) tagged by Andreas Tille on Sun Feb 1 11:54:

[med-svn] [libvcflib] branch pristine-tar created (now 5fe699a)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository libvcflib. at 5fe699a pristine-tar data for libvcflib_0.0.20141212.orig.tar.xz This branch includes the following new commits: new 5fe699a pristine-

[med-svn] [libvcflib] 01/01: pristine-tar data for libvcflib_0.0.20141212.orig.tar.xz

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository libvcflib. commit 5fe699a7c1aba4f34e710ea00d1ab99979dacc3d Author: Andreas Tille Date: Sun Feb 1 11:54:34 2015 +0100 pristine-tar data for libvcflib_0.0.20141212.o

[med-svn] [libvcflib] 02/02: Raw packaging template

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository libvcflib. commit c80f32c87618b0e8daefeda8f740d82ef827d5e5 Author: Andreas Tille Date: Sun Feb 1 11:54:46 2015 +0100 Raw packaging template --- debian/changelog

[med-svn] [libvcflib] branch upstream created (now 47d8807)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository libvcflib. at 47d8807 Imported Upstream version 0.0.20141212 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/gi

[med-svn] [sga] branch debian updated (359711f -> ab8aa04)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch debian in repository sga. from 359711f Merge branch 'debian' of git+ssh://git.debian.org/git/debian-med/sga into debian new 9878e7d cme fix dpkg-control new ab8aa04 Wor

[med-svn] [sga] 02/02: Work a bit into testing (far from finishing)

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch debian in repository sga. commit ab8aa045f60918e979b17f192565dc135811af0a Author: Andreas Tille Date: Sun Feb 1 11:30:58 2015 +0100 Work a bit into testing (far from finishing) --- debian/c

[med-svn] [sga] 01/02: cme fix dpkg-control

2015-02-01 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch debian in repository sga. commit 9878e7d79588fe302ff1c9cbca586f26737e06b6 Author: Andreas Tille Date: Sat Jan 31 19:47:10 2015 +0100 cme fix dpkg-control --- debian/control | 4 ++-- 1 file

[med-svn] r18707 - trunk/packages/vienna-rna/trunk/debian

2015-02-01 Thread Olivier Sallou
Author: osallou Date: 2015-02-01 09:47:31 + (Sun, 01 Feb 2015) New Revision: 18707 Modified: trunk/packages/vienna-rna/trunk/debian/changelog Log: update changes Modified: trunk/packages/vienna-rna/trunk/debian/changelog === -

[med-svn] r18706 - trunk/packages/aragorn/trunk/debian/upstream

2015-02-01 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-02-01 09:45:19 + (Sun, 01 Feb 2015) New Revision: 18706 Modified: trunk/packages/aragorn/trunk/debian/upstream/edam Log: fix YAML Modified: trunk/packages/aragorn/trunk/debian/upstream/edam ===

[med-svn] r18705 - trunk/packages/vienna-rna/trunk/debian

2015-02-01 Thread Olivier Sallou
Author: osallou Date: 2015-02-01 09:44:37 + (Sun, 01 Feb 2015) New Revision: 18705 Modified: trunk/packages/vienna-rna/trunk/debian/rules Log: cleanup fixes for multiple rebuilds Modified: trunk/packages/vienna-rna/trunk/debian/rules

[med-svn] r18704 - trunk/packages/aragorn/trunk/debian/upstream

2015-02-01 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-02-01 09:30:14 + (Sun, 01 Feb 2015) New Revision: 18704 Added: trunk/packages/aragorn/trunk/debian/upstream/edam Log: add EDAM YAML annotation for aragorn Added: trunk/packages/aragorn/trunk/debian/upstream/edam =

[med-svn] r18703 - trunk/packages/aragorn/trunk/debian/upstream

2015-02-01 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-02-01 09:29:44 + (Sun, 01 Feb 2015) New Revision: 18703 Modified: trunk/packages/aragorn/trunk/debian/upstream/metadata Log: remove stray period Modified: trunk/packages/aragorn/trunk/debian/upstream/metadata

[med-svn] [trinityrnaseq] branch upstream created (now f018d02)

2015-02-01 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch upstream in repository trinityrnaseq. at f018d02 Imported Upstream version 2.0.2 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /s

[med-svn] r18702 - trunk/packages/barrnap-data-nonfree/trunk/debian

2015-02-01 Thread Sascha Steinbiss
Author: sascha-guest Date: 2015-02-01 09:11:34 + (Sun, 01 Feb 2015) New Revision: 18702 Modified: trunk/packages/barrnap-data-nonfree/trunk/debian/rules Log: remove dead code Modified: trunk/packages/barrnap-data-nonfree/trunk/debian/rules =

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