[med-svn] [htslib] 06/07: Corrected a typo.

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 69bf167de34bc0c8a192add5f6748fe8dab6 Author: Charles Plessy Date: Mon May 25 13:33:56 2015 +0900 Corrected a typo. --- debian/control | 2 +

[med-svn] [htslib] 05/07: Clead test directory.

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 33636795f14d13134d121af3ce4061e7aabfcc49 Author: Charles Plessy Date: Mon May 25 13:31:02 2015 +0900 Clead test directory. --- debian/rules | 2

[med-svn] [htslib] annotated tag debian/1.2.1-1 created (now 577fa32)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/1.2.1-1 in repository htslib. at 577fa32 (tag) tagging 12251926b9d0265738d701bb0add6fe9d070ccb3 (commit) replaces 1.2.1 tagged by Charles Plessy on Mon Ma

[med-svn] [htslib] 07/07: htslib (1.2.1-1) unstable; urgency=medium

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 12251926b9d0265738d701bb0add6fe9d070ccb3 Author: Charles Plessy Date: Mon May 25 13:56:39 2015 +0900 htslib (1.2.1-1) unstable; urgency=medium

[med-svn] [htslib] 03/07: Install NEWS as upstream changelog.

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 084f27db8fe9132424e2c40db38f6abee253dfe9 Author: Charles Plessy Date: Mon May 25 13:05:28 2015 +0900 Install NEWS as upstream changelog. --- de

[med-svn] [htslib] 04/07: Override a Lintian false positive.

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 316fb961360707c2683cd5fc9a34b0582d13bcbd Author: Charles Plessy Date: Mon May 25 13:25:48 2015 +0900 Override a Lintian false positive. --- deb

[med-svn] [htslib] branch debian/unstable updated (0662716 -> 1225192)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch debian/unstable in repository htslib. from 0662716 Merge tag '1.2.1' into debian/unstable new 4fc92f5 Update symbols file. Note that there are missing symbols. new e047e

[med-svn] [htslib] 01/07: Update symbols file. Note that there are missing symbols.

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 4fc92f5aab173eedbefacef6a2514a5c2d903449 Author: Charles Plessy Date: Mon May 25 12:40:23 2015 +0900 Update symbols file. Note that there are m

[med-svn] [htslib] 02/07: New upstream release; no new copyright nor license statement.

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit e047ee4353bc0305db1db1c3477c3162c3ec9142 Author: Charles Plessy Date: Mon May 25 13:00:44 2015 +0900 New upstream release; no new copyright nor

[med-svn] [htslib] branch debian/build/unstable/amd64 updated (82b85af -> abda3ca)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch debian/build/unstable/amd64 in repository htslib. from 82b85af htslib (1.1-1) unstable; urgency=medium new abda3ca htslib (1.2.1-1) unstable; urgency=medium The 1 revisions list

[med-svn] [htslib] branch debian/unstable updated (9750123 -> 0662716)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch debian/unstable in repository htslib. from 9750123 Current changelog; not sure to upload or not. adds 5ebf9b2 Fix regidx.o dependencies and htslib.mk; alphabetise adds a0e3

[med-svn] [htslib] 01/01: Merge tag '1.2.1' into debian/unstable

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib. commit 0662716ffdbffe1d3606a8182a0ce33f4edd81c0 Merge: 9750123 26229a3 Author: Charles Plessy Date: Mon May 25 11:44:54 2015 +0900 Merge tag '1.2.1' in

[med-svn] [htslib] annotated tag 1.2.1 created (now 6042ece)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag 1.2.1 in repository htslib. at 6042ece (tag) tagging 26229a368e3045a827f04fc03f3879e25f110ba3 (commit) replaces 1.2 tagged by John Marshall on Tue Feb 3 16:24:29

[med-svn] [htslib] annotated tag 1.2 created (now 38563fc)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag 1.2 in repository htslib. at 38563fc (tag) tagging bff5efb85c581efc42d9f3483aa919161906ad0a (commit) replaces 1.1 tagged by John Marshall on Mon Feb 2 14:53:12 2

[med-svn] [htslib] branch master updated (5a0ee03 -> 26229a3)

2015-05-24 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository htslib. from 5a0ee03 Release 1.1: various minor bug fixes adds f5aeebb bgzf_open(..,"g") for compressed gzip output, as opposed to BGZF adds f2080d5

[med-svn] r19281 - trunk/packages/rna-star/trunk/debian

2015-05-24 Thread Charles Plessy
Author: plessy Date: 2015-05-25 02:28:37 + (Mon, 25 May 2015) New Revision: 19281 Modified: trunk/packages/rna-star/trunk/debian/changelog trunk/packages/rna-star/trunk/debian/copyright Log: Remove large GENCODE file, found in later upstream versions. Modified: trunk/packages/rna-star/

[med-svn] [kmer-tools] 02/04: Resolve lintian norelro error and do final clean-up in d/rules

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 4764f6dc86b1cae2a65fbd287dc0c2b1edcc5471 Author: Afif Elghraoui Date: Sun May 24 16:05:10 2015 -0700 Resolve lintian norelro error and do final c

[med-svn] [kmer-tools] branch master updated (b295e1d -> c975881)

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from b295e1d Make kmer and libkmer-dev into metapackages new 81eb3a1 Update copyright year for Brian Walenz new 4764f6d Resolve lin

[med-svn] [kmer-tools] 01/04: Update copyright year for Brian Walenz

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 81eb3a1ce47cc388200a54a8be3e36fdb8fd541d Author: Afif Elghraoui Date: Sun May 24 11:57:32 2015 -0700 Update copyright year for Brian Walenz

[med-svn] [kmer-tools] 04/04: Create manpage for last remaining function

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit c9758816c355d353359e3c04131bc573e9962df4 Author: Afif Elghraoui Date: Sun May 24 17:46:36 2015 -0700 Create manpage for last remaining function

[med-svn] [kmer-tools] 03/04: Don't ship likely unnecessary binaries

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 2db6364b3d3f4bf10ed6b23f900ba7ce169d2924 Author: Afif Elghraoui Date: Sun May 24 17:16:10 2015 -0700 Don't ship likely unnecessary binaries

[med-svn] [kmer-tools] 07/08: Remove brace expansions from meryl package install files

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit dcf2a427b53bb2e8d812e8392e01a9f4789d28c2 Author: Afif Elghraoui Date: Sun May 24 01:34:03 2015 -0700 Remove brace expansions from meryl package i

[med-svn] [kmer-tools] 05/08: Polish the remaining man-pages

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit ca2cfe9f3bd7046bb6441e57b26da8a23d5ba4e4 Author: Afif Elghraoui Date: Sun May 24 01:08:01 2015 -0700 Polish the remaining man-pages Fix

[med-svn] [kmer-tools] 08/08: Make kmer and libkmer-dev into metapackages

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit b295e1d20c0759dd82d91876831b207405a8e131 Author: Afif Elghraoui Date: Sun May 24 02:19:18 2015 -0700 Make kmer and libkmer-dev into metapackages

[med-svn] [kmer-tools] 04/08: Remove explanation of three flags in positionDB.1 that don't exist

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 693ddf0b39566fb081630734c9bde6130bd51b75 Author: Afif Elghraoui Date: Sat May 23 14:58:02 2015 -0700 Remove explanation of three flags in positio

[med-svn] [kmer-tools] 06/08: Remove comment header from manpages

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 77b2ada4eee6fbcbc114fff9a554f78546c638ff Author: Afif Elghraoui Date: Sun May 24 01:13:15 2015 -0700 Remove comment header from manpages --- deb

[med-svn] [kmer-tools] 01/08: Clean up positionDB.1

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 413b59c442af3c3cf016bef4de4f144ced64fdaa Author: Afif Elghraoui Date: Sat May 23 14:50:59 2015 -0700 Clean up positionDB.1 --- debian/positionDB

[med-svn] [kmer-tools] branch master updated (f18f678 -> b295e1d)

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository kmer-tools. from f18f678 Add *.manpages files new 413b59c Clean up positionDB.1 new a289a4a Fix synopsis for existDB.1 new 28ed3d1 Fi

[med-svn] [kmer-tools] 03/08: Fix formatting in manpage

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit 28ed3d1280d97cd7896cb86d1b96be4e70d23603 Author: Afif Elghraoui Date: Sat May 23 14:53:12 2015 -0700 Fix formatting in manpage Bold face

[med-svn] [kmer-tools] 02/08: Fix synopsis for existDB.1

2015-05-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository kmer-tools. commit a289a4ab4740d42d343511d655d34fd864b44381 Author: Afif Elghraoui Date: Sat May 23 14:51:57 2015 -0700 Fix synopsis for existDB.1 Rather t