[med-svn] [Git][med-team/igv][pristine-tar] pristine-tar data for igv_2.17.1+dfsg.orig.tar.xz

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed to branch pristine-tar at Debian Med / igv Commits: 9e4f0d11 by Pierre Gruet at 2024-02-17T10:45:01+01:00 pristine-tar data for igv_2.17.1+dfsg.orig.tar.xz - - - - - 2 changed files: - + igv_2.17.1+dfsg.orig.tar.xz.delta - + igv_2.17.1+dfsg.orig.tar.xz.id Changes: ===

[med-svn] [Git][med-team/igv][upstream] New upstream version 2.17.1+dfsg

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed to branch upstream at Debian Med / igv Commits: a0dad977 by Pierre Gruet at 2024-02-17T10:43:08+01:00 New upstream version 2.17.1+dfsg - - - - - 30 changed files: - − .github/workflows/gradle_test.yml - .gitignore - build.gradle - + docs/index.md - test/web/IGV_64.gif → d

[med-svn] [Git][med-team/igv][master] 13 commits: New upstream version 2.17.1+dfsg

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed to branch master at Debian Med / igv Commits: a0dad977 by Pierre Gruet at 2024-02-17T10:43:08+01:00 New upstream version 2.17.1+dfsg - - - - - fa708a58 by Pierre Gruet at 2024-02-17T10:45:02+01:00 Update upstream source from tag 'upstream/2.17.1+dfsg' Update to upstream ver

[med-svn] [Git][med-team/igv] Pushed new tag upstream/2.17.1+dfsg

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed new tag upstream/2.17.1+dfsg at Debian Med / igv -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/tree/upstream/2.17.1+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-com

[med-svn] [Git][med-team/igv] Pushed new tag debian/2.17.1+dfsg-1

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed new tag debian/2.17.1+dfsg-1 at Debian Med / igv -- View it on GitLab: https://salsa.debian.org/med-team/igv/-/tree/debian/2.17.1+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-com

[med-svn] [Git][med-team/pyranges][master] Replace squeeze

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / pyranges Commits: c2dfc1e3 by Andreas Tille at 2024-02-18T07:11:52+01:00 Replace squeeze - - - - - 1 changed file: - debian/patches/pandas2.0.patch Changes: = debian/patches/pandas2.0.patch

[med-svn] [Git][med-team/pyranges][master] [skip ci] Fix for Pandas 2.0 - not finished thus do not waste computing cycles on Salsa CI

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / pyranges Commits: 89839d44 by Andreas Tille at 2024-02-18T07:04:42+01:00 [skip ci] Fix for Pandas 2.0 - not finished thus do not waste computing cycles on Salsa CI - - - - - 3 changed files: - debian/changelog - + debian/patches/pandas2

[med-svn] [Git][med-team/python-bcbio-gff] Pushed new tag debian/0.7.1-1

2024-02-17 Thread @emollier
Étienne Mollier pushed new tag debian/0.7.1-1 at Debian Med / python-bcbio-gff -- View it on GitLab: https://salsa.debian.org/med-team/python-bcbio-gff/-/tree/debian/0.7.1-1 You're receiving this email because of your account on salsa.debian.org. _

[med-svn] [Git][med-team/python-bcbio-gff] Pushed new tag archive/debian/0.7.1-1

2024-02-17 Thread @emollier
Étienne Mollier pushed new tag archive/debian/0.7.1-1 at Debian Med / python-bcbio-gff -- View it on GitLab: https://salsa.debian.org/med-team/python-bcbio-gff/-/tree/archive/debian/0.7.1-1 You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/python-bcbio-gff] Pushed new tag upstream/0.7.1

2024-02-17 Thread @emollier
Étienne Mollier pushed new tag upstream/0.7.1 at Debian Med / python-bcbio-gff -- View it on GitLab: https://salsa.debian.org/med-team/python-bcbio-gff/-/tree/upstream/0.7.1 You're receiving this email because of your account on salsa.debian.org. _

[med-svn] [Git][med-team/python-bcbio-gff][pristine-tar] pristine-tar data for python-bcbio-gff_0.7.1.orig.tar.gz

2024-02-17 Thread @emollier
Étienne Mollier pushed to branch pristine-tar at Debian Med / python-bcbio-gff Commits: a107e8b3 by Étienne Mollier at 2024-02-17T19:37:54+01:00 pristine-tar data for python-bcbio-gff_0.7.1.orig.tar.gz - - - - - 2 changed files: - + python-bcbio-gff_0.7.1.orig.tar.gz.delta - + python-bcbio-

[med-svn] [Git][med-team/q2-taxa] Pushed new tag debian/2023.9.0+dfsg-2

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed new tag debian/2023.9.0+dfsg-2 at Debian Med / q2-taxa -- View it on GitLab: https://salsa.debian.org/med-team/q2-taxa/-/tree/debian/2023.9.0+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/q2-taxa][master] 2 commits: Patch for Pandas 2.0

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-taxa Commits: 91311eb5 by Andreas Tille at 2024-02-17T19:53:32+01:00 Patch for Pandas 2.0 - - - - - a4c2635d by Andreas Tille at 2024-02-17T19:55:27+01:00 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/pa

[med-svn] [Git][med-team/htslib] Pushed new tag debian/1.19+ds-1

2024-02-17 Thread @emollier
Étienne Mollier pushed new tag debian/1.19+ds-1 at Debian Med / htslib -- View it on GitLab: https://salsa.debian.org/med-team/htslib/-/tree/debian/1.19+ds-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-co

[med-svn] [Git][med-team/samtools] Pushed new tag debian/1.19.2-1

2024-02-17 Thread @emollier
Étienne Mollier pushed new tag debian/1.19.2-1 at Debian Med / samtools -- View it on GitLab: https://salsa.debian.org/med-team/samtools/-/tree/debian/1.19.2-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-

[med-svn] [Git][med-team/samtools] Pushed new tag upstream/1.19.2

2024-02-17 Thread @emollier
Étienne Mollier pushed new tag upstream/1.19.2 at Debian Med / samtools -- View it on GitLab: https://salsa.debian.org/med-team/samtools/-/tree/upstream/1.19.2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-

[med-svn] [Git][med-team/samtools][upstream] New upstream version 1.19.2

2024-02-17 Thread @emollier
Étienne Mollier pushed to branch upstream at Debian Med / samtools Commits: 3f34445e by Étienne Mollier at 2024-02-17T18:08:14+01:00 New upstream version 1.19.2 - - - - - 30 changed files: - LICENSE - NEWS.md - README - bamtk.c - bedidx.c - doc/samtools-addreplacerg.1 - doc/samtools-amplicon

[med-svn] [Git][med-team/samtools][pristine-tar] pristine-tar data for samtools_1.19.2.orig.tar.gz

2024-02-17 Thread @emollier
Étienne Mollier pushed to branch pristine-tar at Debian Med / samtools Commits: a4716b75 by Étienne Mollier at 2024-02-17T18:08:28+01:00 pristine-tar data for samtools_1.19.2.orig.tar.gz - - - - - 2 changed files: - + samtools_1.19.2.orig.tar.gz.delta - + samtools_1.19.2.orig.tar.gz.id Ch

[med-svn] [Git][med-team/samtools][master] 5 commits: routine-update: New upstream version

2024-02-17 Thread @emollier
Étienne Mollier pushed to branch master at Debian Med / samtools Commits: 4ce4e038 by Étienne Mollier at 2024-02-17T18:08:13+01:00 routine-update: New upstream version - - - - - 3f34445e by Étienne Mollier at 2024-02-17T18:08:14+01:00 New upstream version 1.19.2 - - - - - 13ea07af by Étienne M

[med-svn] [Git][med-team/q2-taxa][master] Triggering Salsa CI with new commit

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-taxa Commits: d495b46f by Andreas Tille at 2024-02-17T17:34:15+01:00 Triggering Salsa CI with new commit - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog =

[med-svn] [Git][med-team/q2-types][master] [skip ci] Forward patch

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-types Commits: 67ac1e27 by Andreas Tille at 2024-02-17T17:04:09+01:00 [skip ci] Forward patch - - - - - 1 changed file: - debian/patches/pandas-2.0.patch Changes: = debian/patches/pandas-2.0.patc

[med-svn] [Git][med-team/libtabixpp] Pushed new tag debian/1.1.2-2

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed new tag debian/1.1.2-2 at Debian Med / libtabixpp -- View it on GitLab: https://salsa.debian.org/med-team/libtabixpp/-/tree/debian/1.1.2-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-m

[med-svn] [Git][med-team/libtabixpp][master] 2 commits: enable building twice in a row

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch master at Debian Med / libtabixpp Commits: 4de23de1 by Sascha Steinbiss at 2024-02-17T16:05:02+01:00 enable building twice in a row - - - - - 66cdd439 by Sascha Steinbiss at 2024-02-17T16:05:13+01:00 fix LTO issue - - - - - 3 changed files: - debian/change

[med-svn] [Git][med-team/q2-demux] Pushed new tag debian/2023.9.1+dfsg-2

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed new tag debian/2023.9.1+dfsg-2 at Debian Med / q2-demux -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/tree/debian/2023.9.1+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/q2-demux][master] 2 commits: Force stronger versioned dependency q2-types (>= 2023.9.0-2~) to match python3-pandas Breaks

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-demux Commits: 36f38780 by Andreas Tille at 2024-02-17T15:38:03+01:00 Force stronger versioned dependency q2-types (>= 2023.9.0-2~) to match python3-pandas Breaks - - - - - a0d93246 by Andreas Tille at 2024-02-17T15:40:35+01:00 Upload t

[med-svn] [Git][med-team/nextflow][pristine-tar] pristine-tar data for nextflow_23.04.3+dfsg.orig.tar.xz

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed to branch pristine-tar at Debian Med / nextflow Commits: 6e3d52d7 by Pierre Gruet at 2023-08-18T14:12:45+02:00 pristine-tar data for nextflow_23.04.3+dfsg.orig.tar.xz - - - - - 2 changed files: - + nextflow_23.04.3+dfsg.orig.tar.xz.delta - + nextflow_23.04.3+dfsg.orig.ta

[med-svn] [Git][med-team/nextflow][upstream] New upstream version 23.04.3+dfsg

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed to branch upstream at Debian Med / nextflow Commits: b028069d by Pierre Gruet at 2023-08-18T14:12:35+02:00 New upstream version 23.04.3+dfsg - - - - - 30 changed files: - − .travis.yml - + CITATION.cff - CONTRIBUTING.md - Makefile - NOTICE - README.md - VERSION - build.gr

[med-svn] [Git][med-team/nextflow] Pushed new tag upstream/23.04.3+dfsg

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed new tag upstream/23.04.3+dfsg at Debian Med / nextflow -- View it on GitLab: https://salsa.debian.org/med-team/nextflow/-/tree/upstream/23.04.3+dfsg You're receiving this email because of your account on salsa.debian.org. ___ de

[med-svn] [Git][med-team/nextflow][master] 16 commits: Revising d/watch and repack information in d/copyright

2024-02-17 Thread Pierre Gruet (@pgt)
Pierre Gruet pushed to branch master at Debian Med / nextflow Commits: 62618056 by Pierre Gruet at 2023-08-18T14:12:28+02:00 Revising d/watch and repack information in d/copyright - - - - - b028069d by Pierre Gruet at 2023-08-18T14:12:35+02:00 New upstream version 23.04.3+dfsg - - - - - 49784a

[med-svn] [Git][med-team/khmer] Pushed new tag debian/3.0.0_a3+dfsg-8

2024-02-17 Thread Michael R. Crusoe (@crusoe)
Michael R. Crusoe pushed new tag debian/3.0.0_a3+dfsg-8 at Debian Med / khmer -- View it on GitLab: https://salsa.debian.org/med-team/khmer/-/tree/debian/3.0.0_a3+dfsg-8 You're receiving this email because of your account on salsa.debian.org. ___ d

[med-svn] [Git][med-team/kmc] Pushed new tag upstream/3.2.4+dfsg

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed new tag upstream/3.2.4+dfsg at Debian Med / kmc -- View it on GitLab: https://salsa.debian.org/med-team/kmc/-/tree/upstream/3.2.4+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/kmc] Pushed new tag debian/3.2.4+dfsg-1

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed new tag debian/3.2.4+dfsg-1 at Debian Med / kmc -- View it on GitLab: https://salsa.debian.org/med-team/kmc/-/tree/debian/3.2.4+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-c

[med-svn] [Git][med-team/kmc][upstream] New upstream version 3.2.4+dfsg

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch upstream at Debian Med / kmc Commits: 7c58f582 by Sascha Steinbiss at 2024-02-17T14:57:32+01:00 New upstream version 3.2.4+dfsg - - - - - 30 changed files: - Makefile - kmc_api/kmc_file.cpp - kmc_api/kmc_file.h - kmc_api/kmer_api.cpp - kmc_api/kmer_api.h - k

[med-svn] [Git][med-team/kmc][master] 4 commits: New upstream version 3.2.4+dfsg

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch master at Debian Med / kmc Commits: 7c58f582 by Sascha Steinbiss at 2024-02-17T14:57:32+01:00 New upstream version 3.2.4+dfsg - - - - - 4fed9ee3 by Sascha Steinbiss at 2024-02-17T14:57:33+01:00 Update upstream source from tag 'upstream/3.2.4+dfsg' Update to up

[med-svn] [Git][med-team/kmc][pristine-tar] pristine-tar data for kmc_3.2.4+dfsg.orig.tar.xz

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch pristine-tar at Debian Med / kmc Commits: f263730c by Sascha Steinbiss at 2024-02-17T14:57:33+01:00 pristine-tar data for kmc_3.2.4+dfsg.orig.tar.xz - - - - - 2 changed files: - + kmc_3.2.4+dfsg.orig.tar.xz.delta - + kmc_3.2.4+dfsg.orig.tar.xz.id Changes:

[med-svn] [Git][med-team/libmurmurhash][master] d/watch: Properly named download tarball

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / libmurmurhash Commits: 43af3ace by Andreas Tille at 2024-02-17T14:38:51+01:00 d/watch: Properly named download tarball - - - - - 2 changed files: - debian/changelog - debian/watch Changes: = debian/

[med-svn] [Git][med-team/libhat-trie] Deleted tag upstream/0.6.0

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss deleted tag upstream/0.6.0 at Debian Med / libhat-trie -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.de

[med-svn] [Git][med-team/libhat-trie] Pushed new tag debian/0.1.2-3

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed new tag debian/0.1.2-3 at Debian Med / libhat-trie -- View it on GitLab: https://salsa.debian.org/med-team/libhat-trie/-/tree/debian/0.1.2-3 You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/libhat-trie][upstream] Deleted 1 commit: New upstream version 0.6.0

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch upstream at Debian Med / libhat-trie WARNING: The push did not contain any new commits, but force pushed to delete the commits and changes below. Deleted commits: 83476364 by Michael R. Crusoe at 2020-01-01T11:07:54+01:00 New upstream version 0.6.0 - - - - -

[med-svn] [Git][med-team/libhat-trie][pristine-tar] Deleted 1 commit: pristine-tar data for libhat-trie_0.6.0.orig.tar.gz

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch pristine-tar at Debian Med / libhat-trie WARNING: The push did not contain any new commits, but force pushed to delete the commits and changes below. Deleted commits: 6b43f2c4 by Michael R. Crusoe at 2020-01-01T11:07:54+01:00 pristine-tar data for libhat-tri

[med-svn] [Git][med-team/libhat-trie][master] 5 commits: enable building twice in a row

2024-02-17 Thread Sascha Steinbiss (@satta)
Sascha Steinbiss pushed to branch master at Debian Med / libhat-trie Commits: 4c4178b8 by Sascha Steinbiss at 2024-02-17T14:35:12+01:00 enable building twice in a row - - - - - 5cfa80c7 by Sascha Steinbiss at 2024-02-17T14:35:25+01:00 bump d/copyright data - - - - - 716a37b1 by Sascha Steinbi

[med-svn] [Git][med-team/python-biopython] Deleted tag debian/1.83+dfsg-1

2024-02-17 Thread @emollier
Étienne Mollier deleted tag debian/1.83+dfsg-1 at Debian Med / python-biopython -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-

[med-svn] [Git][med-team/python-biopython][master] un-release biopython 1.83+dfsg-1.

2024-02-17 Thread @emollier
Étienne Mollier pushed to branch master at Debian Med / python-biopython Commits: c6faade8 by Étienne Mollier at 2024-02-17T14:33:06+01:00 un-release biopython 1.83+dfsg-1. The upload did not occur and the package in its current state fails to build from source. - - - - - 1 changed file: -

[med-svn] [Git][med-team/q2-types] Pushed new tag debian/2023.9.0-2

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed new tag debian/2023.9.0-2 at Debian Med / q2-types -- View it on GitLab: https://salsa.debian.org/med-team/q2-types/-/tree/debian/2023.9.0-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-me

[med-svn] [Git][med-team/q2-types][master] 2 commits: Upload to unstable

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-types Commits: f41629b1 by Andreas Tille at 2024-02-17T12:28:56+01:00 Upload to unstable - - - - - 67943813 by Andreas Tille at 2024-02-17T12:45:34+01:00 Test-Depends: python3-all - - - - - 3 changed files: - debian/changelog - debia

[med-svn] [Git][med-team/htslib][master] ready changelog for migration to unstable.

2024-02-17 Thread @emollier
Étienne Mollier pushed to branch master at Debian Med / htslib Commits: 5b5bb5e1 by Étienne Mollier at 2024-02-17T11:46:58+01:00 ready changelog for migration to unstable. - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog ===

[med-svn] [Git][med-team/q2-types][master] For a short moment enable Python3.12 to create a Salca CI log I could point qiime upstream at

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-types Commits: c879a39c by Andreas Tille at 2024-02-17T11:00:26+01:00 For a short moment enable Python3.12 to create a Salca CI log I could point qiime upstream at - - - - - 1 changed file: - debian/tests/run-unit-test Changes: ==

[med-svn] [Git][med-team/q2-types][master] Port to Pandas 2.0 (Thanks to s3v)

2024-02-17 Thread Andreas Tille (@tille)
Andreas Tille pushed to branch master at Debian Med / q2-types Commits: c9a34140 by Andreas Tille at 2024-02-17T08:55:28+01:00 Port to Pandas 2.0 (Thanks to s3v) - - - - - 3 changed files: - debian/changelog - + debian/patches/pandas-2.0.patch - debian/patches/series Changes: ===