Charles Plessy pushed to branch master at Debian Med / gffread
Commits:
bc174363 by Charles Plessy at 2024-07-23T05:29:47+00:00
Remove Breaks/Replace on cufflinks (<< 2.2.1+dfsg.1-4), as oldstable
already has 2.2.1+dfsg.1-8+b1
- - - - -
1 changed file:
- debian/control
C
Charles Plessy pushed to branch master at Debian Med / cluster3
Commits:
3bf08887 by Charles Plessy at 2024-06-26T08:41:16+09:00
routine-update: Standards-Version: 4.7.0
- - - - -
05fc0c12 by Charles Plessy at 2024-06-26T08:41:24+09:00
routine-update: Build-Depends: s/dh-python/dh-sequence
Charles Plessy pushed new tag debian/1.59+ds-6 at Debian Med / cluster3
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Charles Plessy pushed new tag debian/1.20-2 at Debian Med / bcftools
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Charles Plessy pushed to branch master at Debian Med / bcftools
Commits:
88146e98 by Charles Plessy at 2024-06-25T08:30:49+09:00
Only recommend python-matplotlib and python3-gffutils
This allows advanced users to make a minimal installation of bcftools
without these python libraries. Regular
Charles Plessy pushed to branch master at Debian Med / swarm-cluster
Commits:
790cc430 by Charles Plessy at 2024-06-14T02:46:03+00:00
Build-depend on discount instead of markdown
Closes: #1073106
- - - - -
1 changed file:
- debian/control
Changes
Charles Plessy pushed to branch master at Debian Med / ssake
Commits:
e182ba7d by Charles Plessy at 2024-06-14T00:59:30+00:00
Build-depend on discount instead of Markown
Closes: #1073105
- - - - -
1 changed file:
- debian/control
Changes:
=
debian
Charles Plessy pushed new tag debian/0.2.0-12 at Debian Med / srst2
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Charles Plessy pushed to branch master at Debian Med / srst2
Commits:
1a9b2af8 by Charles Plessy at 2024-06-14T09:24:47+09:00
routine-update: Packaging update
- - - - -
1238a783 by Charles Plessy at 2024-06-14T09:24:47+09:00
routine-update: Standards-Version: 4.7.0
- - - - -
178d924a by
Charles Plessy pushed to branch master at Debian Med / srst2
Commits:
5f8b6e60 by Charles Plessy at 2024-06-14T00:24:20+00:00
Build-depend on discount instead of markdown
Closes: #1073104
- - - - -
1 changed file:
- debian/control
Changes:
=
debian
Charles Plessy pushed new tag debian/0.994+git20141017.20d3cff-5 at Debian Med
/ scythe
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Charles Plessy pushed to branch master at Debian Med / scythe
Commits:
72660e72 by Charles Plessy at 2024-06-14T08:53:19+09:00
Update changelog
- - - - -
f03746f2 by Charles Plessy at 2024-06-14T08:53:51+09:00
Set upstream metadata fields: Bug-Submit.
Changes-By: lintian-brush
Fixes: lintian
Charles Plessy pushed to branch master at Debian Med / scythe
Commits:
953eea52 by Charles Plessy at 2024-06-13T23:51:27+00:00
Build-depend on discount instead of makdown
Closes: #1073103
- - - - -
1 changed file:
- debian/control
Changes:
=
debian
Charles Plessy pushed to branch master at Debian Med / libvcflib
Commits:
becbc363 by Charles Plessy at 2024-06-13T23:50:06+00:00
Build-depend on discount instead of markdown
Closes: #1073098
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1 changed file:
- debian/control
Changes
Charles Plessy pushed new tag debian/2.0a-4 at Debian Med / hilive
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Charles Plessy pushed to branch master at Debian Med / hilive
Commits:
a30d0516 by Charles Plessy at 2024-06-14T08:29:57+09:00
Fix debian/watch
- - - - -
7409d9d0 by Charles Plessy at 2024-06-14T08:30:22+09:00
Commit changelog
- - - - -
9e7a67e3 by Charles Plessy at 2024-06-14T08:30:39+09:00
Charles Plessy pushed to branch master at Debian Med / hilive
Commits:
904fb9ec by Charles Plessy at 2024-06-13T23:15:21+00:00
Build-depend on discount instead of markdown
Closes: #1073095
- - - - -
1 changed file:
- debian/control
Changes:
=
debian
Charles Plessy pushed to branch master at Debian Med / alter-sequence-alignment
Commits:
3516749a by Charles Plessy at 2024-06-13T08:48:35+09:00
Build-depend on discount instead of markdown.
Closes: #1073090
- - - - -
125042d5 by Charles Plessy at 2024-06-13T08:49:31+09:00
routine-update
Charles Plessy pushed new tag debian/1.3.4-9 at Debian Med /
alter-sequence-alignment
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Charles Plessy pushed to branch master at Debian Med / adapterremoval
Commits:
7fa04878 by Charles Plessy at 2024-06-13T08:28:40+09:00
Build-depend on discount instead of markdown
Closes: #1073089
- - - - -
1dbe1973 by Charles Plessy at 2024-06-13T08:41:28+09:00
Update changelog
Charles Plessy pushed new tag debian/2.3.3-3 at Debian Med / adapterremoval
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Charles Plessy pushed new tag upstream/3.1.24 at Debian Med / biomaj3
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Charles Plessy pushed new tag debian/3.1.24-1 at Debian Med / biomaj3
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Charles Plessy pushed to branch pristine-tar at Debian Med / biomaj3
Commits:
a39e94da by Charles Plessy at 2024-04-19T09:18:39+09:00
pristine-tar data for biomaj3_3.1.24.orig.tar.xz
- - - - -
2 changed files:
- + biomaj3_3.1.24.orig.tar.xz.delta
- + biomaj3_3.1.24.orig.tar.xz.id
Changes
Charles Plessy pushed to branch master at Debian Med / bcftools
Commits:
83c9ef0f by Charles Plessy at 2024-04-18T08:51:21+09:00
New upstream version 1.20
- - - - -
217daed1 by Charles Plessy at 2024-04-18T08:51:21+09:00
routine-update: New upstream version
- - - - -
cf9eccc1 by Charles
Charles Plessy pushed new tag upstream/2.5.3 at Debian Med / bowtie2
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Charles Plessy pushed new tag debian/2.5.3-1 at Debian Med / bowtie2
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Charles Plessy pushed to branch pristine-tar at Debian Med / bowtie2
Commits:
84939e42 by Charles Plessy at 2024-04-17T08:56:22+09:00
pristine-tar data for bowtie2_2.5.3.orig.tar.gz
- - - - -
2 changed files:
- + bowtie2_2.5.3.orig.tar.gz.delta
- + bowtie2_2.5.3.orig.tar.gz.id
Changes
Charles Plessy pushed new tag upstream/1542 at Debian Med / last-align
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Charles Plessy pushed new tag debian/1542-1 at Debian Med / last-align
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Charles Plessy pushed to branch pristine-tar at Debian Med / last-align
Commits:
04c79abe by Charles Plessy at 2024-02-21T08:04:49+09:00
pristine-tar data for last-align_1542.orig.tar.xz
- - - - -
2 changed files:
- + last-align_1542.orig.tar.xz.delta
- + last-align_1542.orig.tar.xz.id
Charles Plessy pushed new tag debian/1540-1 at Debian Med / last-align
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Charles Plessy pushed new tag upstream/1540 at Debian Med / last-align
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Charles Plessy pushed to branch upstream at Debian Med / last-align
Commits:
d47302cc by Charles Plessy at 2024-02-05T09:27:01+09:00
New upstream version 1540
- - - - -
30 changed files:
- bin/last-dotplot
- bin/last-train
- bin/maf-cut
- + data/RY128-12.seed
- doc/FAQ.rst
- doc/last
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align
Commits:
99029b71 by Charles Plessy at 2024-02-05T09:27:08+09:00
pristine-tar data for last-align_1540.orig.tar.xz
- - - - -
2 changed files:
- + last-align_1540.orig.tar.xz.delta
- + last-align_1540.orig.tar.xz.id
Charles Plessy pushed to branch master at Debian Med / last-align
Commits:
0629d171 by Charles Plessy at 2024-02-05T09:27:00+09:00
routine-update: New upstream version
- - - - -
d47302cc by Charles Plessy at 2024-02-05T09:27:01+09:00
New upstream version 1540
- - - - -
77902401 by Charles
Charles Plessy pushed to branch master at Debian Med / last-align
Commits:
418bcdcb by Charles Plessy at 2023-12-18T02:49:01+00:00
last*5* commands were removed recently upstream
- - - - -
ac00796e by Charles Plessy at 2023-12-18T02:49:54+00:00
New upstream version 1519
- - - - -
f186b658 by
Charles Plessy pushed new tag debian/1519-1 at Debian Med / last-align
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Charles Plessy pushed new tag upstream/1519 at Debian Med / last-align
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Charles Plessy pushed to branch upstream at Debian Med / last-align
Commits:
ac00796e by Charles Plessy at 2023-12-18T02:49:54+00:00
New upstream version 1519
- - - - -
30 changed files:
- .gitignore
- bin/last-dotplot
- bin/last-train
- + data/RY64-13.seed
- doc/last-cookbook.rst
- doc
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align
Commits:
d9c4409e by Charles Plessy at 2023-12-18T02:49:59+00:00
pristine-tar data for last-align_1519.orig.tar.xz
- - - - -
2 changed files:
- + last-align_1519.orig.tar.xz.delta
- + last-align_1519.orig.tar.xz.id
Charles Plessy pushed new tag upstream/1471 at Debian Med / last-align
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Charles Plessy pushed new tag debian/1471-1 at Debian Med / last-align
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Charles Plessy pushed to branch pristine-tar at Debian Med / last-align
Commits:
806cff34 by Charles Plessy at 2023-08-24T01:51:58+00:00
pristine-tar data for last-align_1471.orig.tar.xz
- - - - -
2 changed files:
- + last-align_1471.orig.tar.xz.delta
- + last-align_1471.orig.tar.xz.id
Charles Plessy pushed new tag upstream/1460 at Debian Med / last-align
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Charles Plessy pushed new tag debian/1460-1 at Debian Med / last-align
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Charles Plessy pushed to branch pristine-tar at Debian Med / last-align
Commits:
79e1ab8b by Charles Plessy at 2023-07-14T09:36:22+09:00
pristine-tar data for last-align_1460.orig.tar.xz
- - - - -
2 changed files:
- + last-align_1460.orig.tar.xz.delta
- + last-align_1460.orig.tar.xz.id
Charles Plessy pushed to branch master at Debian Med / seaview
Commits:
15722bf4 by Charles Plessy at 2022-12-15T15:14:40+09:00
Patch for command-line arguments of MUSCLE 5.
- - - - -
4 changed files:
- align.cxx
- debian/changelog
- + debian/patches/muscle5
- + debian/patches/series
Charles Plessy pushed new tag debian/1%5.0.5-2 at Debian Med / seaview
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Charles Plessy pushed new tag upstream/1418 at Debian Med / last-align
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Charles Plessy pushed new tag debian/1418-1 at Debian Med / last-align
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Charles Plessy pushed to branch master at Debian Med / pychopper
Commits:
65604dc8 by Charles Plessy at 2022-10-18T14:27:48+09:00
Prepare for next upstream release.
cdna_classifier.py disappears and setup.py has no shebang line anymore.
- - - - -
1 changed file:
- debian/patches
Charles Plessy pushed to branch master at Debian Med / pychopper
Commits:
c1462291 by Charles Plessy at 2022-10-18T09:33:27+09:00
Point to new upstream source repository.
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/upstream/metadata
- debian
Charles Plessy pushed to branch master at Debian Med / muscle
Commits:
b3ba6031 by Charles Plessy at 2022-04-11T22:44:46+09:00
Just caught it today while talking about licences with colleagues.
- - - - -
1 changed file:
- debian/copyright
Changes
Charles Plessy pushed to branch master at Debian Med / emboss
Commits:
7a121b7e by Charles Plessy at 2021-03-28T13:44:05+09:00
Remove quotes in mailcap entries.
Closes: #985596
Thanks: Marriott NZ <marriot...@gmx.com>
Lintian: quoted-placeholder-in-mailcap-entry
- - - - -
70321b1b by C
Charles Plessy pushed new tag debian/6.6.0+dfsg-9 at Debian Med / emboss
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Charles Plessy pushed to branch master at Debian Med / policy
Commits:
15f339c1 by Charles Plessy at 2020-09-09T03:51:48+09:00
Explain why the page takes a minute to be updated.
- - - - -
88cab8a2 by Charles Plessy at 2020-09-09T03:52:12+09:00
Rebuild the HTML file.
- - - - -
2 changed
Charles Plessy pushed to branch master at Debian Med / policy
Commits:
ed5a686a by Charles Plessy at 2020-09-09T03:49:26+09:00
Update instructions on how to publish the HTML version.
- - - - -
c24fccc9 by Charles Plessy at 2020-09-09T03:49:49+09:00
Update the HTML version.
- - - - -
2
Charles Plessy pushed to branch master at Debian Med / policy
Commits:
c17bfa89 by Charles Plessy at 2020-09-09T03:39:58+09:00
Rebuild the HTML file.
- - - - -
1 changed file:
- policy.html
Changes:
=
policy.html
Charles Plessy pushed to branch master at Debian Med / policy
Commits:
0aed3271 by Charles Plessy at 2020-09-09T03:10:04+09:00
ddtp.debian.net → ddtp.debian.org
- - - - -
c35864ae by Charles Plessy at 2020-09-09T03:16:37+09:00
Correct this document's URL.
- - - - -
c1cf3298 by Charles P
Charles Plessy pushed new tag debian/1080-1 at Debian Med / last-align
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Charles Plessy pushed new tag upstream/1080 at Debian Med / last-align
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Charles Plessy pushed to branch master at Debian Med / last-align
Commits:
b412e2cc by Charles Plessy at 2020-08-12T18:32:59+09:00
Update URL to Debian Med Policy.
- - - - -
1 changed file:
- debian/rules
Changes:
=
debian/rules
Charles Plessy pushed to branch master at Debian Med / kalign
Commits:
9f250274 by Charles Plessy at 2020-03-18T18:09:15+09:00
New upstream version 3.2.3
- - - - -
5ac8ac77 by Charles Plessy at 2020-03-18T18:09:21+09:00
Update upstream source from tag 'upstream/3.2.3'
Update t
Charles Plessy pushed to branch master at Debian Med / last-align
Commits:
83889db9 by Charles Plessy at 2019-12-18T07:24:23Z
Use the contact address found in the manual page.
- - - - -
082bb910 by Charles Plessy at 2019-12-18T07:27:37Z
Update copyright information.
- - - - -
1 changed
Charles Plessy pushed to branch master at Debian Med / policy
Commits:
3a580b38 by Charles Plessy at 2019-03-12T14:21:07Z
The Salsa CI pipeline and its configuration file in the debian dir.
- - - - -
1 changed file:
- policy.rst
Changes:
=
policy.rst
Charles Plessy pushed to branch master at Debian Med / bedtools
Commits:
c0e8d812 by Charles Plessy at 2019-02-14T13:12:01Z
bedtools (2.27.1+dfsg-4) unstable; urgency=medium
* Disable the shuffle test on other 32-bit architectures.
* Restrict build to little-endian release architectures
Charles Plessy pushed new tag debian/2.27.1+dfsg-4 at Debian Med / bedtools
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Charles Plessy pushed to branch master at Debian Med / bedtools
Commits:
22403e2c by Charles Plessy at 2019-02-13T12:56:41Z
QA-build with Salsa.
- - - - -
72faeba5 by Charles Plessy at 2019-02-13T13:13:43Z
Disable the shuffle test on other 32-bit architectures.
- - - - -
25d45b7a by Charles
Charles Plessy pushed to branch master at Debian Med / perlprimer
Commits:
96801d9a by Charles Plessy at 2019-02-13T12:26:02Z
Conforms to Policy version 4.3.0
- - - - -
7bf079bb by Charles Plessy at 2019-02-13T12:27:17Z
Remove trailing whitespaces in the changelog.
Lintian: file-contains
Charles Plessy pushed new tag upstream/1.2.4 at Debian Med / perlprimer
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Charles Plessy pushed new tag debian/1.2.4-1 at Debian Med / perlprimer
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Charles Plessy pushed to branch pristine-tar at Debian Med / perlprimer
Commits:
de3b5fc1 by Charles Plessy at 2019-02-13T12:08:46Z
pristine-tar data for perlprimer_1.2.4.orig.tar.gz
- - - - -
2 changed files:
- + perlprimer_1.2.4.orig.tar.gz.delta
- + perlprimer_1.2.4.orig.tar.gz.id
Charles Plessy pushed to branch master at Debian Med / perlprimer
Commits:
420ef40c by Charles Plessy at 2019-02-13T12:04:31Z
QA-build with Salsa.
- - - - -
1 changed file:
- + debian/gitlab-ci.yml
Changes:
=
debian/gitlab-ci.yml
Charles Plessy pushed to branch master at Debian Med / samtools
Commits:
7f2247a0 by Charles Plessy at 2018-05-11T09:44:04+09:00
Mention the CRAM format in the description.
- - - - -
2 changed files:
- debian/changelog
- debian/control
Changes:
=
debian
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from a77924a libtfbs-perl (0.7.1-1) unstable; urgency=medium
new b070d21 Update metadata; add SciCrunch ID.
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commit b070d2137c24b20e577107ae6b5bda6ef78e9800
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Date: Sun Oct 22 17:20:06 2017 +0900
Update metadata; add SciCrunch ID
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commit 392d4ece03aeeff616d0a2dc70009429a6a92643
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Conforms to Policy version 4.1.1.
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commit fc8a912f60e332013e9b255fadc63f70d665107f
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Date: Sat Oct 21 11:23:35 2017 +0900
Remove cruft Makefiles at build time
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commit a77924aa9cf5f61e126ef21027259c6e4887abc3
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Date: Sat Oct 21 11:46:18 2017 +0900
libtfbs-perl (0.7.1-1) unstable; urgency
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commit 0f40a06f0fbbe901aac0e182d743b2740064a76a
Author: Charles Plessy
Date: Sat Oct 21 10:56:39 2017 +0900
pristine-tar data for libtfbs
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=p1nS
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Charles Plessy (1):
New upstream version 0.7.1
---
This annotated tag includes the following new commits:
new 16bdbb0 New upstream
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replaces upstream/0.7.1
tagged by Charles Plessy
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commit fb6026da72aa281791ab49d67e1eae99b0895ff0
Author: Charles Plessy
Date: Sat Oct 21 11:19:05 2017 +0900
Refresh spelling error patch.
---
debian
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from d3b49c3 pristine-tar data for libtfbs-perl_0.7.0+dfsg.orig.tar.xz
new 0f40a06 pristine-tar data for libtfbs-perl_0.7.1.orig.tar.gz
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from d61aae7 Imported Upstream version 0.7.0+dfsg
new 16bdbb0 New upstream version 0.7.1
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commit 7ac36df8aa20c07d434925c9cde96bf58a49f657
Author: Charles Plessy
Date: Sat Oct 21 10:55:33 2017 +0900
Stop repacking upstream sources, that are
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from 423a8a0 Upload to unstable
new 7ac36df Stop repacking upstream sources, that are cleaner.
new 16bdbb0 New upstream version 0.7.1
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commit 4eac69bc5f4dc247936c8de847d5a2388ec68b9e
Merge: 7ac36df 16bdbb0
Author: Charles Plessy
Date: Sat Oct 21 10:56:43 2017 +0900
Merge tag 'ups
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commit 26ca40e7df03f63e24c8cd86a504250c834becf0
Author: Charles Plessy
Date: Sat Oct 21 11:00:58 2017 +0900
Add upstream's notice of deprecation t
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from 00a898d New upstream version 869
new 899a681 New upstream version 885
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repo
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commit f1f8b1923754105586d8d118faaa2ec7c6d03b6a
Author: Charles Plessy
Date: Sun Oct 15 22:21:04 2017 +0900
last-align (885-1) unstable; urgency=medium
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commit 5e39664a12fbca85c96299e0801b2b06ce139d1b
Author: Charles Plessy
Date: Sun Oct 15 22:14:22 2017 +0900
Depend on zlib1g-dev.
---
debian/control | 3
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commit ea4e1cd736faa6c0108e41efcb52bc47b3978ab7
Author: Charles Plessy
Date: Sun Oct 15 22:05:38 2017 +0900
pristine-tar data for last-align_885
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commit c2d94c99456d4f9e97d0c90cae937b584964cd29
Merge: 72682ad 899a681
Author: Charles Plessy
Date: Sun Oct 15 22:05:41 2017 +0900
Merge tag 'upstrea
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tagging f1f8b1923754105586d8d118faaa2ec7c6d03b6a (commit)
replaces debian/869-1
tagged by Charles Plessy
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commit 51e07bd07c8571f4c384a809f51ecf0add26d776
Author: Charles Plessy
Date: Sun Oct 15 22:06:13 2017 +0900
Re-enable multi-threading.
---
debian/rules
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replaces upstream/869
tagged by Charles Plessy
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The 1 revisions
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commit 899a68165f8864d3cfb67aca39ac97a2add9c8ac
Author: Charles Plessy
Date: Sun Oct 15 22:05:37 2017 +0900
New upstream version 885
---
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