Michael R. Crusoe pushed to branch master at Debian Med / abyss
Commits: 0149298f by Michael R. Crusoe at 2019-02-15T14:23:32Z Fix MPI build - - - - - 4 changed files: - debian/changelog - debian/control - debian/rules - debian/tests/run-unit-test Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +abyss (2.1.5-5) UNRELEASED; urgency=medium + + * Team upload. + * Fix MPI build. Closes: #922351 + + -- Michael R. Crusoe <michael.cru...@gmail.com> Fri, 15 Feb 2019 05:37:20 -0800 + abyss (2.1.5-4) unstable; urgency=medium * Fix build on hurd due to missing header file (thanks for the patch ===================================== debian/control ===================================== @@ -10,7 +10,8 @@ Build-Depends: debhelper (>= 12~), libsparsehash-dev, libtext-multimarkdown-perl, libgtest-dev, - libsqlite3-dev + libsqlite3-dev, + pkg-config Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/abyss Vcs-Git: https://salsa.debian.org/med-team/abyss.git ===================================== debian/rules ===================================== @@ -10,7 +10,8 @@ export DH_OPTIONS dh $@ override_dh_auto_configure: - dh_auto_configure -- --with-mpi=/usr/lib/openmpi + dh_auto_configure -- \ + --with-mpi=$(shell pkg-config mpi --variable=includedir | sed s=/include==) override_dh_auto_build: dh_auto_build ===================================== debian/tests/run-unit-test ===================================== @@ -14,6 +14,8 @@ gunzip -r * abyss-pe k=25 name=test in='test-data/reads1.fastq test-data/reads2.fastq' +echo Testing mpi compilation +/usr/lib/abyss/ABYSS-P --help View it on GitLab: https://salsa.debian.org/med-team/abyss/commit/0149298fc0016196f025482f8f1f61cc8b0d0632 -- View it on GitLab: https://salsa.debian.org/med-team/abyss/commit/0149298fc0016196f025482f8f1f61cc8b0d0632 You're receiving this email because of your account on salsa.debian.org.
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