Steffen Möller pushed to branch master at Debian Med / fasta3
Commits: d61cb91b by Steffen Moeller at 2020-01-06T12:22:17+01:00 Preparing for upload - - - - - 3 changed files: - debian/changelog - debian/control - debian/patches/Makefile.patch Changes: ===================================== debian/changelog ===================================== @@ -1,13 +1,20 @@ -fasta3 (36.3.8h-1) UNRELEASED; urgency=medium +fasta3 (36.3.8h-1) unstable; urgency=medium + [ Andreas Tille ] * Team upload. * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 - TODO: Do we really need to use non-free smith waterman code? - There is a free libssw. Please contact upstream! - -- Andreas Tille <ti...@debian.org> Mon, 19 Aug 2019 21:45:02 +0200 + TODO: Do we really need to use non-free smith waterman code? + There is a free libssw. Please contact upstream! + + [ Steffen Moeller] + * Standards-Version: 4.4.1 + * Fixed patches - somehow one Makefile.common was removed but needed + that led to a FTBFS. + + -- Steffen Moeller <moel...@debian.org> Mon, 06 Jan 2020 12:20:34 +0100 fasta3 (36.3.8g-1) unstable; urgency=low ===================================== debian/control ===================================== @@ -6,7 +6,7 @@ XS-Autobuild: no Priority: optional Build-Depends: debhelper-compat (= 12), zlib1g-dev -Standards-Version: 4.4.0 +Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/fasta3 Vcs-Git: https://salsa.debian.org/med-team/fasta3.git Homepage: http://fasta.bioch.virginia.edu ===================================== debian/patches/Makefile.patch ===================================== @@ -29,58 +29,3 @@ Description: Makefile +CFLAGS += -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DM10_CONS -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 # -I/usr/include/mysql -DMYSQL_DB # -DSUPERFAMNUM -DSFCHAR="'|'" - ---- a/make/Makefile36m.common -+++ /dev/null -@@ -1,51 +0,0 @@ --# --# $Name: $ - $Id: Makefile36m.common 1250 2014-01-24 21:33:39Z wrp $ --# --# commands common to all architectures --# if your architecture does not support "include", append at the end. --# -- --COMP_LIBO=comp_mlib9.o # reads database into memory for multi-query without delay --COMP_THRO=comp_mthr9.o # threaded version -- --WORK_THRO=work_thr2.o --GETSEQO = -- --# standard nxgetaa, no memory mapping for 0 - 6 --#LGETLIB=getseq.o lgetlib.o --#NGETLIB=nmgetlib -- --# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN --LGETLIB= $(GETSEQO) lgetlib.o lgetaa_m.o --NGETLIB=nmgetlib -- --# use ncbl_lib.c for BLAST1.4 support instead of ncbl2_mlib.c --#NCBL_LIB=ncbl_lib.o -- --# this option should support both formats (BLAST1.4 not currently supported): --#NCBL_LIB=ncbl_lib.o ncbl2_mlib.o -- --# normally use ncbl2_mlib.c --#NCBL_LIB=ncbl2_mlib.o --#LIB_M= -lm -- --# this option supports NCBI BLAST2 and mySQL --# it requires "-I/usr/include/mysql -DMYSQL_DB" in CFLAGS --# and "-L/usr/lib64/mysql -lmysqlclient -lz" in LIB_M --# some systems may also require a LD_LIBRARY_PATH change -- --LIB_M= -lm --#LIB_M= -L/usr/lib64/mysql -lmysqlclient -lm # -lz --NCBL_LIB=ncbl2_mlib.o --#NCBL_LIB=ncbl2_mlib.o mysql_lib.o -- --# threaded as _t, serial --# include ../make/Makefile.pcom -- --# threaded without _t --include ../make/Makefile.pcom_t -- --# serial only --# include ../make/Makefile.pcom_s -- --include ../make/Makefile.fcom View it on GitLab: https://salsa.debian.org/med-team/fasta3/commit/d61cb91bbfbcdbe918b8720a22af87b34550aef8 -- View it on GitLab: https://salsa.debian.org/med-team/fasta3/commit/d61cb91bbfbcdbe918b8720a22af87b34550aef8 You're receiving this email because of your account on salsa.debian.org.
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