Andreas Tille pushed to branch master at Debian Med / genometester
Commits: b4577f5f by Andreas Tille at 2018-10-06T09:49:25Z Remove binaries from upstream source, point watch file to Git HEAD - - - - - edc46387 by Andreas Tille at 2018-10-06T09:50:09Z New upstream version 4.0+git20180508.a9c14a6+dfsg - - - - - 659c6f9f by Andreas Tille at 2018-10-06T09:50:09Z Update upstream source from tag 'upstream/4.0+git20180508.a9c14a6+dfsg' Update to upstream version '4.0+git20180508.a9c14a6+dfsg' with Debian dir 15af1db2fe9e407329e57dc7a8481fac041c04c3 - - - - - d8dd447e by Andreas Tille at 2018-10-06T09:53:01Z Update changelog - - - - - f1db1a30 by Andreas Tille at 2018-10-06T09:53:34Z Standards-Version: 4.2.1 - - - - - 388474b1 by Andreas Tille at 2018-10-06T10:05:49Z Upload to unstable - - - - - 11 changed files: - − bin/glistcompare - − bin/glistmaker - − bin/glistquery - − bin/gmer_caller - − bin/gmer_counter - debian/changelog - debian/control - debian/copyright - debian/watch - src/Makefile - src/gdistribution.c Changes: ===================================== bin/glistcompare deleted ===================================== Binary files a/bin/glistcompare and /dev/null differ ===================================== bin/glistmaker deleted ===================================== Binary files a/bin/glistmaker and /dev/null differ ===================================== bin/glistquery deleted ===================================== Binary files a/bin/glistquery and /dev/null differ ===================================== bin/gmer_caller deleted ===================================== Binary files a/bin/gmer_caller and /dev/null differ ===================================== bin/gmer_counter deleted ===================================== Binary files a/bin/gmer_counter and /dev/null differ ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +genometester (4.0+git20180508.a9c14a6+dfsg-1) unstable; urgency=medium + + * Remove binaries from upstream source + * Use git mode in watch file since gdistribution is needed by some + dependencies + * Standards-Version: 4.2.1 + + -- Andreas Tille <ti...@debian.org> Sat, 06 Oct 2018 12:04:26 +0200 + genometester (4.0-1) unstable; urgency=medium * Initial release (Closes: #900752) ===================================== debian/control ===================================== @@ -5,7 +5,7 @@ Uploaders: Liubov Chuprikova <chuprikov...@gmail.com>, Section: science Priority: optional Build-Depends: debhelper (>= 11~) -Standards-Version: 4.1.4 +Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/genometester Vcs-Git: https://salsa.debian.org/med-team/genometester.git Homepage: https://github.com/bioinfo-ut/GenomeTester4 ===================================== debian/copyright ===================================== @@ -1,6 +1,7 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: GenomeTester4 Source: https://github.com/bioinfo-ut/GenomeTester4/releases +Files-Excluded: */bin Files: * Copyright: 2014-2016 University of Tartu ===================================== debian/watch ===================================== @@ -1,4 +1,6 @@ version=4 -opts="uversionmangle=s/_/./g" \ - https://github.com/bioinfo-ut/GenomeTester4/releases .*/archive/Version_(\d[_.\d]+)@ARCHIVE_EXT@ +opts="mode=git,pretty=4.0+git%cd.%h,repacksuffix=+dfsg,dversionmangle=auto,uversionmangle=s/_/./g,repack,compression=xz" \ + https://github.com/bioinfo-ut/GenomeTester4.git HEAD + +# https://github.com/bioinfo-ut/GenomeTester4/releases .*/archive/Version_(\d[_.\d]+)@ARCHIVE_EXT@ ===================================== src/Makefile ===================================== @@ -8,9 +8,9 @@ CXX = gcc LISTMAKER_SOURCES = \ glistmaker.c \ common.c common.h \ + fasta.c fasta.h \ wordtable.c wordtable.h \ wordmap.c wordmap.h \ - fasta.c fasta.h \ buffer.c buffer.h \ sequence.c sequence.h \ sequence-file.c sequence-file.h \ @@ -54,6 +54,18 @@ LISTCOMPARE_SOURCES = \ queue.c queue.h \ utils.c +GDISTRIBUTION_SOURCES = \ + gdistribution.c \ + wordtable.c \ + wordmap.c \ + fasta.c \ + buffer.c \ + sequence.c \ + sequence-file.c sequence-file.h \ + common.c \ + queue.c queue.h \ + utils.c + GMER_COUNTER_SOURCES = \ gmer_counter.c \ index.c index.h \ @@ -134,6 +146,9 @@ glistquery: $(LISTQUERY_SOURCES) glistcompare: $(LISTCOMPARE_SOURCES) $(CXX) $(LISTCOMPARE_SOURCES) -o glistcompare $(LIBS) $(CXXFLAGS) +gdistribution: $(GDISTRIBUTION_SOURCES) + $(CXX) $(GDISTRIBUTION_SOURCES) -o gdistribution $(LIBS) $(CXXFLAGS) + gmer_counter: $(GMER_COUNTER_SOURCES) $(CXX) $(GMER_COUNTER_SOURCES) -o gmer_counter $(LIBS) $(CXXFLAGS) -Wall ===================================== src/gdistribution.c ===================================== @@ -40,7 +40,7 @@ typedef struct { unsigned int count; } Freq; -static void get_distribution (wordmap *maps[2]); +static void get_distribution (GT4WordMap *maps[2]); static void print_usage (FILE *ofs) { @@ -51,7 +51,7 @@ int main (int argc, const char *argv[]) { const char *names[2]; - wordmap *maps[2]; + GT4WordMap *maps[2]; Freq *freqs; if (argc < 3) { @@ -64,8 +64,8 @@ main (int argc, const char *argv[]) if (debug) fprintf (stderr, "%s %s\n", names[0], names[1]); - maps[0] = wordmap_new (names[0], 1); - maps[1] = wordmap_new (names[1], 1); + maps[0] = gt4_wordmap_new (names[0], 1); + maps[1] = gt4_wordmap_new (names[1], 1); get_distribution (maps); @@ -79,7 +79,7 @@ static int compare (const void *lhs, const void *rhs) { } static void -get_distribution (wordmap *maps[2]) +get_distribution (GT4WordMap *maps[2]) { unsigned long long size, i0, i1, fidx; unsigned int j, count; View it on GitLab: https://salsa.debian.org/med-team/genometester/compare/faa8320a5f353b53602519c9c7558d6f9a4e3993...388474b10f6bcfc0153a0b44a544ff8cad38846b -- View it on GitLab: https://salsa.debian.org/med-team/genometester/compare/faa8320a5f353b53602519c9c7558d6f9a4e3993...388474b10f6bcfc0153a0b44a544ff8cad38846b You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
