Steffen Möller pushed to branch master at Debian Med / gubbins


Commits:
292f4685 by Steffen Moeller at 2020-01-08T12:59:28+01:00
New upstream version 2.4.0
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a29d7583 by Steffen Moeller at 2020-01-08T12:59:28+01:00
routine-update: New upstream version

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501c00f0 by Steffen Moeller at 2020-01-08T12:59:30+01:00
Update upstream source from tag 'upstream/2.4.0'

Update to upstream version '2.4.0'
with Debian dir 8b30a0c7cd76c1b43e15270e26e8206ed9369833
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c73549ce by Steffen Moeller at 2020-01-08T13:17:48+01:00
Upload of 2.4

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30 changed files:

- Dockerfile
- README.md
- VERSION
- debian/changelog
- debian/control
- − debian/patches/disable_test.patch
- debian/patches/do_not_handle_python_by_upstream_build_system.patch
- debian/patches/gubbins_exe_in_usr_lib.patch
- debian/patches/series
- − depcomp
- example_data/PMEN1/README.md
- install_dependencies.sh
- − ltmain.sh
- − missing
- python/gubbins/PreProcessFasta.py
- − python/gubbins/RAxMLExecutable.py
- − python/gubbins/RAxMLSequenceReconstruction.py
- python/gubbins/common.py
- + python/gubbins/tests/__init__.py
- + python/gubbins/tests/data/concatenate_fasta_files.aln.expected
- 
python/gubbins/tests/data/raxml_sequence_reconstruction/expected_rooted_tree.newick
 → python/gubbins/tests/data/expected_rooted_tree.newick
- + python/gubbins/tests/data/further_alignment.aln
- + python/gubbins/tests/data/iqtree_ancestral.fasta.expected
- + python/gubbins/tests/data/iqtree_ancestral.state
- + python/gubbins/tests/data/raxml_ancestral.fasta.expected
- + python/gubbins/tests/data/raxml_ancestral.state
- − python/gubbins/tests/data/raxml_sequence_reconstruction/1.fasta
- − python/gubbins/tests/data/raxml_sequence_reconstruction/2.fasta
- − 
python/gubbins/tests/data/raxml_sequence_reconstruction/expected_ancestor_sequence_from_raxml
- − 
python/gubbins/tests/data/raxml_sequence_reconstruction/expected_combined_1_2.fasta


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/gubbins/compare/a5d3d1a7981c9c4da29a03ca1e7dadddb50e1505...c73549ce1bd801e26a02b73b37ee2d32d5788431

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/gubbins/compare/a5d3d1a7981c9c4da29a03ca1e7dadddb50e1505...c73549ce1bd801e26a02b73b37ee2d32d5788431
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