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satta pushed a change to branch master
in repository ariba.
from a72b2ea use debhelper 10
new 9d05111 new upstream release
new 110e4fe New upstream version 2.11.0+ds
new d63dc76 Update upstream source from tag 'upstream/2.11.0+ds'
new 587424c dch -r
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
README.md | 122 ++++++++++---
ariba/assembly.py | 114 +++++++++++-
ariba/cluster.py | 95 +++++++---
ariba/clusters.py | 199 +++++++++++++--------
ariba/common.py | 10 +-
ariba/external_progs.py | 16 +-
ariba/mic_plotter.py | 2 +
ariba/tasks/run.py | 4 +-
ariba/tests/assembly_test.py | 48 ++++-
ariba/tests/cluster_test.py | 72 +++++---
...mbly_test_assemble_with_spades_fails_reads_1.fq | 4 +
...mbly_test_assemble_with_spades_fails_reads_2.fq | 5 +
... assembly_test_assemble_with_spades_reads_1.fq} | 0
... assembly_test_assemble_with_spades_reads_2.fq} | 0
.../assembly_test_check_spades_log_file.log.bad | 5 +
.../assembly_test_check_spades_log_file.log.good | 5 +
debian/changelog | 6 +
scripts/ariba | 6 +
setup.py | 2 +-
19 files changed, 554 insertions(+), 161 deletions(-)
create mode 100644
ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq
create mode 100644
ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq
copy ariba/tests/data/{assembly_assemble_with_fermilite.reads_1.fq =>
assembly_test_assemble_with_spades_reads_1.fq} (100%)
copy ariba/tests/data/{assembly_assemble_with_fermilite.reads_2.fq =>
assembly_test_assemble_with_spades_reads_2.fq} (100%)
create mode 100644 ariba/tests/data/assembly_test_check_spades_log_file.log.bad
create mode 100644
ariba/tests/data/assembly_test_check_spades_log_file.log.good
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