This is an automated email from the git hooks/post-receive script. moeller pushed a change to branch master in repository fast5.
from c66dbbd Added references to registries. new 1a33a45 New upstream version 0.6.2 new 0276783 Updated version 0.6.2 from 'upstream/0.6.2' new c435e52 Getting 0.6.2 to build binaries. The 3 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: .travis.Dockerfile.in | 17 +- .travis.yml | 2 +- .version_files | 2 +- README.org | 91 +- VERSION | 2 +- debian/changelog | 14 + debian/patches/functional.patch | 12 + debian/patches/hdf5include.patch | 13 + debian/patches/rpath.patch | 22 +- debian/patches/series | 6 +- debian/rules | 2 + python/.gitignore | 1 + python/Makefile | 20 +- python/bin/f5ls | 249 ++++ python/bin/f5pack | 240 ++++ python/fast5/.version.py.in | 1 - python/fast5/__init__.py | 10 - python/fast5/fast5.pyx | 523 +++++++ python/fast5/source/fast5.cpp | 182 --- python/fast5/version.py | 1 - python/setup.py | 86 +- src/.fast5_version.hpp.in | 16 + src/.gitignore | 1 + src/Bit_Packer.hpp | 152 ++ src/File_Packer.hpp | 982 +++++++++++++ src/Huffman_Packer.hpp | 357 +++++ src/Makefile | 42 +- src/cwmap.fast5_ed_len_1.inl | 103 ++ src/cwmap.fast5_ed_skip_1.inl | 4 + src/cwmap.fast5_ev_move_1.inl | 6 + src/cwmap.fast5_ev_rel_skip_1.inl | 4 + src/cwmap.fast5_fq_bp_1.inl | 7 + src/cwmap.fast5_fq_qv_1.inl | 35 + src/cwmap.fast5_rw_1.inl | 204 +++ src/f5-mod.cpp | 14 +- src/f5dump.cpp | 96 +- src/f5ls-full.cpp | 35 +- src/f5ls.cpp | 17 +- src/f5pack.cpp | 185 +++ src/fast5.hpp | 2788 ++++++++++++++++++++++++++++--------- src/fast5_version.hpp | 16 + src/hdf5-mod.cpp | 12 + src/hdf5_tools.hpp | 316 ++++- src/huffman-decode.cpp | 55 + src/huffman-encode.cpp | 44 + src/hufftk | 171 +++ src/logger.hpp | 378 +++++ src/tmp.cpp | 7 + 48 files changed, 6396 insertions(+), 1147 deletions(-) create mode 100644 debian/patches/functional.patch create mode 100644 debian/patches/hdf5include.patch create mode 100755 python/bin/f5ls create mode 100755 python/bin/f5pack delete mode 100644 python/fast5/.version.py.in delete mode 100755 python/fast5/__init__.py create mode 100644 python/fast5/fast5.pyx delete mode 100644 python/fast5/source/fast5.cpp delete mode 100644 python/fast5/version.py mode change 100644 => 100755 python/setup.py create mode 100644 src/.fast5_version.hpp.in create mode 100644 src/Bit_Packer.hpp create mode 100644 src/File_Packer.hpp create mode 100644 src/Huffman_Packer.hpp create mode 100644 src/cwmap.fast5_ed_len_1.inl create mode 100644 src/cwmap.fast5_ed_skip_1.inl create mode 100644 src/cwmap.fast5_ev_move_1.inl create mode 100644 src/cwmap.fast5_ev_rel_skip_1.inl create mode 100644 src/cwmap.fast5_fq_bp_1.inl create mode 100644 src/cwmap.fast5_fq_qv_1.inl create mode 100644 src/cwmap.fast5_rw_1.inl create mode 100644 src/f5pack.cpp create mode 100644 src/fast5_version.hpp create mode 100644 src/huffman-decode.cpp create mode 100644 src/huffman-encode.cpp create mode 100755 src/hufftk create mode 100644 src/logger.hpp -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fast5.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit