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tille pushed a commit to branch master
in repository fsa.
commit 8fa3230f60cd9b03eb737812492ffd927f4476a6
Author: Andreas Tille <ti...@debian.org>
Date: Mon Aug 18 12:23:08 2014 +0000
Use help2man for manpages; tools without manpage currently are just
throwing SIGSEGV - need to contact upstream
---
debian/control | 3 ++-
debian/createmanpages | 16 ----------------
debian/rules | 48 +++++++++++++++++++++++++++++++++---------------
3 files changed, 35 insertions(+), 32 deletions(-)
diff --git a/debian/control b/debian/control
index dc27f39..110b64e 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,8 @@ Priority: optional
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Uploaders: Andreas Tille <ti...@debian.org>
Build-Depends: debhelper (>= 9),
- dh-autoreconf
+ dh-autoreconf,
+ help2man
Standards-Version: 3.9.5
Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/fsa/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/fsa/trunk/
diff --git a/debian/createmanpages b/debian/createmanpages
deleted file mode 100755
index febcd91..0000000
--- a/debian/createmanpages
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/sh
-MANDIR=debian
-mkdir -p $MANDIR
-
-VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e
's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
-
-help2man --no-info --no-discard-stderr --help-option=" " \
- --name='<optional description of the program>' \
- --version-string="$VERSION" <programname> > $MANDIR/<programname>.1
-
-cat <<EOT
-Please enhance the help2man output.
-The following web page might be helpful in doing so:
- http://liw.fi/manpages/
-EOT
-
diff --git a/debian/rules b/debian/rules
index c678330..c950af8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -2,19 +2,13 @@
# DH_VERBOSE := 1
-# some helpful variables - uncomment them if needed
-# shamelessly stolen from http://jmtd.net/log/awk/
-#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
-#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e
's/-.*//')
-#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print
$$2}')
-#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}'
debian/gbp.conf)
-#GIT_TAG := $(subst ~,_,$(VERSION))
-
-# alternatively to manually set those variables you can
-# include /usr/share/cdbs/1/rules/buildvars.mk
-# and use what is set there. Any hint whether dh might set variables in
-# a similar manner are welcome.
+VERSION := $(shell dpkg-parsechangelog | grep Version: | cut -f2
-d' ' | cut -f1 -d- )
+DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+
+mandir=$(CURDIR)/debian/$(DEBPKGNAME)/usr/share/man/man1
+bindir=$(CURDIR)/debian/$(DEBPKGNAME)/usr/bin
+
+HELP2MAN = help2man --no-info --version-string="$(VERSION)"
%:
dh $@ --with autoreconf
@@ -23,5 +17,29 @@ override_dh_auto_test:
echo "Tests seem to miss some files:"
echo "make[4]: *** No rule to make target
'apps/isect_d.unmappable.bash', needed by 'apps/isect_d.unmappable.bash.log'.
Stop."
-#get-orig-source:
-# . debian/get-orig-source
+override_dh_installman:
+ # try to create man pages whereever possible
+ mkdir -p $(mandir)
+ $(HELP2MAN) \
+ --name='Distance-based alignment of DNA, RNA and proteins' \
+ $(bindir)/fsa > $(mandir)/fsa.1
+ $(HELP2MAN) \
+ --name='Find the most-parsimonious ordering of indels' \
+ $(bindir)/gapcleaner > $(mandir)/gapcleaner.1
+ $(HELP2MAN) \
+ --name='Calculate the percentage identity of the passed alignment'
\
+ $(bindir)/percentid > $(mandir)/percentid.1
+ $(HELP2MAN) \
+ --name='Find the codon alignment corresponding to the given
protein alignment' \
+ $(bindir)/prot2codon > $(mandir)/prot2codon.1
+ $(HELP2MAN) \
+ --name='Slice a subsequence from an input FASTA file' \
+ $(bindir)/slice_fasta > $(mandir)/slice_fasta.1
+ $(HELP2MAN) \
+ --name='Slice subsequences from an input FASTA file' \
+ $(bindir)/slice_fasta_gff > $(mandir)/slice_fasta_gff.1
+ $(HELP2MAN) \
+ --name='Translate input nucleotide sequences into protein
sequence.' \
+ $(bindir)/translate > $(mandir)/translate.1
+
+
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