This is an automated email from the git hooks/post-receive script.
afif-guest pushed a change to branch debian/jessie
in repository python-cobra.
from fe42d7c Upload to jessie-backports
adds 252895d Appropriately change some 'recommends' to 'suggests'
adds d83ae9e Adjust package relationships as requested by upstream
adds 4aa43cd Make matplotlib suggested and pandas recommended as
advised by upstream
adds eb3fb84 Imported Upstream version 0.4.0b2
adds 68334d9 Merge tag 'upstream/0.4.0b2'
adds 86676fc Add new changelog entry
adds ab93ecd Prepare links file for a separate docs package
adds 728c40f Remove traces of documentation package
adds e045eaf Change Source URL to point to github repository rather
than project homepage
adds eef5809 Update changelog to indicate closing new release BTS
ticket
adds a3aedb9 Add new build-dependencies on python{3}-jsonschema
adds a39c76b Leave off jsonschema builddepends until it becomes
available in unstable
adds 754fc2a Force dependency on the matching version of the data
package
adds 743792f Tweak description of data package
adds d6ea8b3 Configure autopkgtests
adds a90687b Allow tests to run without python-jsonschema
adds 6b03e0c Add lintian overrides for python-cobra-data
adds 8ef2c1a Update changelog
adds 25e1f3b Use standard short name for GPL version (without decimal
point).
adds 1f1cb07 python-cobra (0.4.0b2-1) unstable; urgency=medium
new cdfe131 Merge branch 'master' into debian/jessie
new 992446c Prepare backport release
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 15 +-
INSTALL.md | 10 +-
appveyor.yml | 14 +-
cobra/VERSION | 2 +-
cobra/core/Gene.py | 39 +-
cobra/core/Metabolite.py | 2 +-
cobra/core/Model.py | 26 +-
cobra/core/Object.py | 41 +-
cobra/core/Reaction.py | 32 +-
cobra/core/Species.py | 15 +-
cobra/io/json.py | 203 +-
cobra/io/mat.py | 25 +-
cobra/io/sbml.py | 4 +-
cobra/io/sbml3.py | 390 +-
cobra/manipulation/modify.py | 75 +-
cobra/test/__init__.py | 2 +-
cobra/test/data/mini.json | 1345 +-
cobra/test/data/mini.mat | Bin 14752 -> 14352 bytes
cobra/test/data/mini.pickle | Bin 10952 -> 25348 bytes
cobra/test/data/mini_cobra.xml | 342 +-
cobra/test/data/mini_fbc1.xml | 387 +-
cobra/test/data/mini_fbc2.xml | 1416 +-
cobra/test/data/mini_fbc2.xml.bz2 | Bin 0 -> 4939 bytes
cobra/test/data/mini_fbc2.xml.gz | Bin 0 -> 5637 bytes
cobra/test/data/salmonella_fbc.xml | 77257 ----------------------
cobra/test/data/textbook.xml | 1562 -
cobra/test/data/textbook.xml.gz | Bin 0 -> 16329 bytes
cobra/test/data/textbook_fva.json | 1 +
cobra/test/data/update_pickles.py | 115 +-
cobra/test/flux_analysis.py | 52 +-
cobra/test/io_tests.py | 80 +-
cobra/test/unit_tests.py | 3 +
debian/changelog | 17 +
debian/control | 27 +-
debian/copyright | 8 +-
debian/patches/series | 2 +
debian/patches/test-suite-return-code.patch | 24 +
debian/patches/testsuite-check-jsonschema.patch | 29 +
debian/python-cobra-data.install | 1 -
debian/python-cobra-data.links | 2 -
debian/python-cobra-data.lintian-overrides | 4 +
debian/tests/control | 7 +
documentation_builder/io.ipynb | 37 +-
setup.py | 3 +-
44 files changed, 3866 insertions(+), 79750 deletions(-)
create mode 100644 cobra/test/data/mini_fbc2.xml.bz2
create mode 100644 cobra/test/data/mini_fbc2.xml.gz
delete mode 100644 cobra/test/data/salmonella_fbc.xml
delete mode 100644 cobra/test/data/textbook.xml
create mode 100644 cobra/test/data/textbook.xml.gz
create mode 100644 cobra/test/data/textbook_fva.json
create mode 100644 debian/patches/test-suite-return-code.patch
create mode 100644 debian/patches/testsuite-check-jsonschema.patch
delete mode 100644 debian/python-cobra-data.links
create mode 100644 debian/python-cobra-data.lintian-overrides
create mode 100644 debian/tests/control
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