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in repository python-pbh5tools.
commit 979d878be80e9ae2f9f314ec9d13bc40c2d8a063
Author: Afif Elghraoui <a...@ghraoui.name>
Date: Sat Aug 15 11:57:31 2015 -0700
Remove plaintext help files
---
debian/bash5tools.md | 34 ----------------------------------
debian/cmph5tools.md | 26 --------------------------
2 files changed, 60 deletions(-)
diff --git a/debian/bash5tools.md b/debian/bash5tools.md
deleted file mode 100644
index 8e3d99b..0000000
--- a/debian/bash5tools.md
+++ /dev/null
@@ -1,34 +0,0 @@
-usage: bash5tools [-h] [--verbose] [--version] [--profile] [--debug]
- [--outFilePrefix OUTFILEPREFIX]
- [--readType {ccs,subreads,unrolled}] [--outType OUTTYPE]
- [--minLength MINLENGTH] [--minReadScore MINREADSCORE]
- [--minPasses MINPASSES]
- input.bas.h5
-
-Tool for extracting data from .bas.h5 files
-
-positional arguments:
- input.bas.h5 input .bas.h5 filename
-
-optional arguments:
- -h, --help show this help message and exit
- --verbose, -v Set the verbosity level (default: None)
- --version show program's version number and exit
- --profile Print runtime profile at exit (default: False)
- --debug Catch exceptions in debugger (requires ipdb) (default:
- False)
- --outFilePrefix OUTFILEPREFIX
- output filename prefix [None]
- --readType {ccs,subreads,unrolled}
- read type (ccs, subreads, or unrolled) []
- --outType OUTTYPE output file type (fasta, fastq) [fasta]
-
-Read filtering arguments:
- --minLength MINLENGTH
- min read length [0]
- --minReadScore MINREADSCORE
- min read score, valid only with
- --readType={unrolled,subreads} [0]
- --minPasses MINPASSES
- min number of CCS passes, valid only with
- --readType=ccs [0]
diff --git a/debian/cmph5tools.md b/debian/cmph5tools.md
deleted file mode 100644
index 32c3abc..0000000
--- a/debian/cmph5tools.md
+++ /dev/null
@@ -1,26 +0,0 @@
-usage: cmph5tools [-h] [--verbose] [--version] [--profile] [--debug]
-
{select,merge,sort,equal,summarize,stats,listMetrics,validate}
- ...
-
-Toolkit for command-line tools associated with cmp.h5 file processing. Notes:
-For all command-line arguments, default values are listed in [].
-
-positional arguments:
- {select,merge,sort,equal,summarize,stats,listMetrics,validate}
- select Create new cmp.h5 files from selections of
- input.cmp.h5
- merge Merge input.cmp.h5 files into out.cmp.h5
- sort Sort input.cmp.h5 file
- equal Compare two cmp.h5 files for equivalence
- summarize Summarize contents of cmp.h5 files
- stats Compute statistics from input.cmp.h5
- listMetrics List available metrics
- validate Validate input.cmp.h5
-
-optional arguments:
- -h, --help show this help message and exit
- --verbose, -v Set the verbosity level (default: None)
- --version show program's version number and exit
- --profile Print runtime profile at exit (default: False)
- --debug Catch exceptions in debugger (requires ipdb) (default:
- False)
--
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